Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

31830513 .. 31831183

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG284100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCGGTCAGAGTTTCTTCGCGGTCTCGGCTTTCCATATCTTCTCCATTTTATCATGGTGTATGCCTTGTTCACTGTGATATGGGTGTATGCCTTGTTAATTTTTGTCAGATTATATACCTACGGAAGCCTGATGGCCCTAGCTACTTGCCAGTTGCCACACAGGAGCATAGACTCGCTATTACACCTCGATTGGAGGAGATAAATTCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004635 GO:0004636 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016462 GO:0016787 GO:0016810 GO:0016814 GO:0016817 GO:0016818 GO:0018130 GO:0019238 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

PRA-CH PRA-PH

Protein Analysis

80

Amino Acids

8.98

Weight (kDa)

8.38

Isoelectric Point (pI)

75.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	232
AluBI	AGCT	2 cut(s)	171, 240
AluI	AGCT	2 cut(s)	171, 240
Alw26I	GTCTC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	164
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	165
Bso31I	GGTCTC	1 cut(s)	57
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	179
Bst4CI	ACNGT	3 cut(s)	15, 23, 104
BstFNI	CGCG	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	19, 100
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	58, 157, 165, 171, 240
CviKI_1	RGCY	5 cut(s)	58, 157, 165, 171, 240
Eco31I	GGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	86
FaiI	YATR	8 cut(s)	65, 84, 91, 110, 118, 143, 145, 198
FatI	CATG	1 cut(s)	82
FspBI	CTAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	165
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	11, 100
Hpy188I	TCNGA	2 cut(s)	38, 138
Hpy8I	GTNNAC	2 cut(s)	11, 100
HpyCH4III	ACNGT	3 cut(s)	15, 23, 104
HpyCH4V	TGCA	1 cut(s)	28
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	171, 176, 192
MaeI	CTAG	1 cut(s)	168
MboII	GAAGA	2 cut(s)	36, 60
MluCI	AATT	2 cut(s)	127, 232
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	2 cut(s)	217, 225
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	164
PsrI	GAACNNNNNNTAC	2 cut(s)	81, 113
PvuII	CAGCTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	126
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	195
SetI	ASST	4 cut(s)	150, 173, 217, 242
Sse9I	AATT	2 cut(s)	127, 232
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	15, 23, 104
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	2 cut(s)	127, 232
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	26, 107
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	2 cut(s)	26, 107
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.