Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

25905437 .. 25905910

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACTACCCACTTCTCAAACAAGACGGTACTAGTTGAAATCCGAGCTCAGTATCTTCTTCACATTATGTCATTCCTACCCAAAGATCTGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGAGTCGAAGAGATTGAAACAGGTCATTGTTGATCTGGAGCTTTATCTTTTTGAGAAAAATGTGATGTTCTATGCGGTACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGTTCGTTTCTTTTCCTTACTTGGTTACATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

92

Amino Acids

11.04

Weight (kDa)

9.7

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	17 - 84	5.2e-07	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	30, 204
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	38, 142
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	2 cut(s)	47, 166
AluI	AGCT	2 cut(s)	47, 166
Alw21I	GWGCWC	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	1 cut(s)	32
BglII	AGATCT	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	85, 157
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
BssMI	GATC	2 cut(s)	85, 157
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	88, 160
BstMBI	GATC	2 cut(s)	85, 157
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	29, 203
CspAI	ACCGGT	1 cut(s)	231
CviJI	RGCY	3 cut(s)	47, 120, 166
CviKI_1	RGCY	3 cut(s)	47, 120, 166
CviQI	GTAC	2 cut(s)	29, 203
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	87, 159
DpnII	GATC	2 cut(s)	85, 157
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Ecl136II	GAGCTC	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	49
FaiI	YATR	3 cut(s)	68, 198, 273
FriOI	GRGCYC	1 cut(s)	49
FspBI	CTAG	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	182
HapII	CCGG	1 cut(s)	232
HinfI	GANTC	2 cut(s)	100, 128
HpaII	CCGG	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	44, 90
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	85, 157
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	106, 131, 146, 228, 245
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	110, 267
MalI	GATC	2 cut(s)	87, 159
MboI	GATC	2 cut(s)	85, 157
MboII	GAAGA	3 cut(s)	47, 50, 145
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	137
MseI	TTAA	1 cut(s)	277
MspI	CCGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	85, 157
PfeI	GAWTC	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	231
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	2 cut(s)	30, 204
RsaNI	GTAC	2 cut(s)	29, 203
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	85, 157
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	4 cut(s)	49, 150, 168, 247
SgeI	CNNG	9 cut(s)	34, 44, 56, 120, 133, 158, 173, 244, 255
SpeI	ACTAGT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	107, 131
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.