Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

12764197 .. 12768461

Gene Structure 4265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTCGTCGTCCTCCCCAACCCTCAACCCCACTCACAGACTCACACTCCAAGAAGCCATGCAAAACTCGGACCACCCACCACCGCCGTCGCCATTCCCCTCCAACCCTTCATTCAAAGACCGCTTCTTAGTCTTCCTCATCATCTTCGCCTCTTCCCTCTTCGCCCTCCTCGTCTTCCTCACCCTCTCCTCCTCCTCCCCCTCCTCCTCCGCCTCCCTCACCTACGCCACTCTCTCCCCACCCTCCTCCTCCTCCTCCTTCTCCCCTCCTTCCTCCCCCCATATGCCACCCGACCCGTTTCTCTTCCCGACCCAGCAGAGCCACCGTGTCATCTACCACGACAACAACTCCTCCGATCCGACCCCTCCCTCCTTGGCCTACCTCCTCTCCGGGTCTAAAGGCGACTTGGGTCGGATCCTCCGCCTCCTCCACGCCACCTACCACCCCAGAAACCAATACCTCCTCCACCTTGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTGGCCCTCAAGGTCCAATCCGTCCCCATCTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTGTACCGAAAAGGCTCCTCTTCCATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAGCCAATTGGGACTGGTTCATTAGCCTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATCTTGTCGTTTCTGCCCAAAGATCTGAACTTTGTGAACCATTCGAGTTACATTGGCTGGAGAGAGTCGAAGAGATTGAAACCGGTCATTGTTGATCCGGGGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCAGCACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGTGCTTCATTTAATATTCTAAGTCGTAACTTTATGGAGTTTTGTGTTCTTGGTATTGACAACCTCCCACGGACTCTATTGATGTATTTTGCAAACACAGCTTCTTCCCTTTCTGACTACTTTCCTACTGTTATTTGCAACTCCCGGCAGTTCAATAAAACTGTCCTAAACCATAATTTACTATATGCTAATTTTGACACACCCCCAAAAGAGAAGCATCCGCTGCTCAATTCCAGTGATTTTGATGTTATGGTTCGGAATGGAGCTGCCTTTGCCACAGGATTTCGATCAGATGATCCAATACTTGACCGTATAGACAGAGAAATTTTAGAACGCCGCCGGGGAAAAGTTGTGCCTGGTGGTTGGTGTTTAGGTGGGTTTGGAAATGACACTTGCTCAATTTGGGGAGATGCTGATATTTTGAGGCCTAGTCCAAGAGCAAGAGGACTCGAGAAACTTTTAGTTGGTTTGCTCTCAAATGGTACATTTCGTTCCCACCAATGTATATATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

471

Amino Acids

52.78

Weight (kDa)

9.07

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	125 - 372	2.1e-55	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	626
AciI	CCGC	8 cut(s)	83, 121, 210, 421, 475, 543, 1121, 1237
AclWI	GGATC	5 cut(s)	350, 409, 422, 809, 1190
AcsI	RAATTY	1 cut(s)	1224
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	2 cut(s)	584, 1384
AgeI	ACCGGT	2 cut(s)	802, 888
AgsI	TTSAA	3 cut(s)	115, 799, 1054
AjnI	CCWGG	1 cut(s)	1255
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	572, 1001, 1166
AluI	AGCT	3 cut(s)	572, 1001, 1166
AlwI	GGATC	5 cut(s)	350, 409, 422, 809, 1190
Ama87I	CYCGRG	1 cut(s)	1349
AoxI	GGCC	3 cut(s)	375, 507, 1325
ApeKI	GCWGC	3 cut(s)	857, 1123, 1166
ApoI	RAATTY	1 cut(s)	1224
AsiGI	ACCGGT	2 cut(s)	802, 888
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	3 cut(s)	70, 508, 517
AsuC2I	CCSGG	4 cut(s)	391, 819, 1045, 1241
AsuHPI	GGTGA	2 cut(s)	172, 211
AvaI	CYCGRG	1 cut(s)	1349
AvaII	GGWCC	2 cut(s)	70, 517
BamHI	GGATCC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	124, 166
BbvI	GCAGC	3 cut(s)	869, 1110, 1153
BccI	CCATC	3 cut(s)	539, 564, 611
BceAI	ACGGC	2 cut(s)	70, 637
BciT130I	CCWGG	1 cut(s)	1257
BcnI	CCSGG	4 cut(s)	391, 819, 1045, 1241
BfaI	CTAG	1 cut(s)	1329
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	5 cut(s)	543, 858, 1124, 1167, 1237
BlsI	GCNGC	5 cut(s)	544, 859, 1125, 1168, 1238
Bme1390I	CCNGG	5 cut(s)	391, 819, 1045, 1241, 1257
Bme18I	GGWCC	2 cut(s)	70, 517
BmeT110I	CYCGRG	1 cut(s)	1349
BmgT120I	GGNCC	3 cut(s)	70, 508, 517
BmiI	GGNNCC	2 cut(s)	416, 595
BmrFI	CCNGG	5 cut(s)	391, 819, 1045, 1241, 1257
BmsI	GCATC	2 cut(s)	1126, 1300
BoxI	GACNNNNGTC	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	124, 166
BpmI	CTGGAG	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	4 cut(s)	391, 819, 1045, 1241
BsaBI	GATNNNNATC	1 cut(s)	1186
BsaJI	CCNNGG	5 cut(s)	372, 619, 818, 968, 1240
BsaWI	WCCGGW	3 cut(s)	639, 802, 888
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 332, 335, 362, 365, 371, 401
Bse118I	RCCGGY	2 cut(s)	802, 888
Bse1I	ACTGG	3 cut(s)	502, 665, 1134
Bse8I	GATNNNNATC	1 cut(s)	1186
BseBI	CCWGG	1 cut(s)	1257
BseDI	CCNNGG	5 cut(s)	372, 619, 818, 968, 1240
BseGI	GGATG	1 cut(s)	1117
BseJI	GATNNNNATC	1 cut(s)	1186
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	3 cut(s)	502, 665, 1134
BseXI	GCAGC	3 cut(s)	869, 1110, 1153
BseYI	CCCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	3 cut(s)	377, 509, 1327
BshTI	ACCGGT	2 cut(s)	802, 888
BsiHKCI	CYCGRG	1 cut(s)	1349
BsiSI	CCGG	7 cut(s)	390, 640, 803, 818, 889, 1045, 1240
BslFI	GGGAC	2 cut(s)	512, 671
BsmFI	GGGAC	2 cut(s)	512, 671
BsnI	GGCC	3 cut(s)	377, 509, 1327
BsoBI	CYCGRG	1 cut(s)	1349
Bsp143I	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
BspACI	CCGC	8 cut(s)	83, 121, 210, 421, 475, 543, 1121, 1237
BspANI	GGCC	3 cut(s)	377, 509, 1327
BspCNI	CTCAG	1 cut(s)	826
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	2 cut(s)	416, 595
BspPI	GGATC	5 cut(s)	350, 409, 422, 809, 1190
BsrFI	RCCGGY	2 cut(s)	802, 888
BsrI	ACTGG	3 cut(s)	502, 665, 1134
BssAI	RCCGGY	2 cut(s)	802, 888
BssECI	CCNNGG	5 cut(s)	372, 619, 818, 968, 1240
BssMI	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	1257
Bst4CI	ACNGT	6 cut(s)	326, 497, 679, 1030, 1063, 1211
Bst6I	CTCTTC	5 cut(s)	157, 164, 308, 604, 785
BstAPI	GCANNNNNTGC	1 cut(s)	1123
BstDEI	CTNAG	3 cut(s)	127, 834, 920
BstDSI	CCRYGG	2 cut(s)	619, 968
BstF5I	GGATG	1 cut(s)	1117
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	7 cut(s)	358, 417, 712, 745, 817, 1190, 1198
BstMBI	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
BstMWI	GCNNNNNNNGC	3 cut(s)	998, 1123, 1172
BstNI	CCWGG	1 cut(s)	1257
BstPAI	GACNNNNGTC	1 cut(s)	408
BstSCI	CCNGG	5 cut(s)	389, 817, 1043, 1239, 1255
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	869, 1110, 1153
BstV2I	GAAGAC	2 cut(s)	124, 166
BstX2I	RGATCY	2 cut(s)	414, 742
BstYI	RGATCY	2 cut(s)	414, 742
BsuRI	GGCC	3 cut(s)	377, 509, 1327
BtgI	CCRYGG	2 cut(s)	619, 968
BtsCI	GGATG	1 cut(s)	1117
BtsIMutI	CAGTG	2 cut(s)	675, 1141
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	2 cut(s)	802, 888
Cfr13I	GGNCC	3 cut(s)	70, 508, 517
CseI	GACGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	583, 1383
CspAI	ACCGGT	2 cut(s)	802, 888
CviAII	CATG	1 cut(s)	58
CviQI	GTAC	2 cut(s)	583, 1383
DdeI	CTNAG	3 cut(s)	127, 834, 920
DpnI	GATC	7 cut(s)	357, 416, 711, 744, 816, 1189, 1197
DpnII	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
Eam1104I	CTCTTC	5 cut(s)	157, 164, 308, 604, 785
EarI	CTCTTC	5 cut(s)	157, 164, 308, 604, 785
EciI	GGCGGA	2 cut(s)	199, 410
Eco130I	CCWWGG	1 cut(s)	372
Eco147I	AGGCCT	1 cut(s)	1327
Eco47I	GGWCC	2 cut(s)	70, 517
Eco57I	CTGAAG	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	1349
EcoRII	CCWGG	1 cut(s)	1255
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	61
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FaqI	GGGAC	2 cut(s)	512, 671
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	282
Fnu4HI	GCNGC	5 cut(s)	543, 858, 1124, 1167, 1237
FokI	GGATG	1 cut(s)	1104
Fsp4HI	GCNGC	5 cut(s)	543, 858, 1124, 1167, 1237
FspBI	CTAG	1 cut(s)	1329
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	5 cut(s)	543, 858, 1124, 1167, 1237
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	3 cut(s)	377, 509, 1327
HapII	CCGG	7 cut(s)	390, 640, 803, 818, 889, 1045, 1240
HgaI	GACGC	1 cut(s)	615
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HinfI	GANTC	5 cut(s)	39, 631, 785, 973, 1347
HpaII	CCGG	7 cut(s)	390, 640, 803, 818, 889, 1045, 1240
HphI	GGTGA	2 cut(s)	172, 211
Hpy166II	GTNNAC	4 cut(s)	583, 612, 757, 897
Hpy188III	TCNNGA	2 cut(s)	307, 1351
Hpy8I	GTNNAC	4 cut(s)	583, 612, 757, 897
Hpy99I	CGWCG	3 cut(s)	10, 91, 631
HpyAV	CCTTC	3 cut(s)	117, 268, 279
HpyCH4III	ACNGT	6 cut(s)	326, 497, 679, 1030, 1063, 1211
HpyCH4V	TGCA	4 cut(s)	61, 857, 992, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	998, 1123, 1172
HpyF3I	CTNAG	3 cut(s)	127, 834, 920
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
LmnI	GCTCC	3 cut(s)	599, 642, 1163
Lsp1109I	GCAGC	3 cut(s)	869, 1110, 1153
LweI	GCATC	2 cut(s)	1126, 1300
MaeI	CTAG	1 cut(s)	1329
MaeIII	GTNAC	3 cut(s)	497, 767, 926
MalI	GATC	7 cut(s)	357, 416, 711, 744, 816, 1189, 1197
MboI	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
MfeI	CAATTG	1 cut(s)	652
MflI	RGATCY	2 cut(s)	414, 742
MluCI	AATT	6 cut(s)	652, 1075, 1090, 1129, 1224, 1299
MlyI	GAGTC	4 cut(s)	33, 794, 967, 1341
MmeI	TCCRAC	3 cut(s)	126, 383, 392
MseI	TTAA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	1123
MspI	CCGG	7 cut(s)	390, 640, 803, 818, 889, 1045, 1240
MspR9I	CCNGG	5 cut(s)	391, 819, 1045, 1241, 1257
MunI	CAATTG	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	1257
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	3 cut(s)	998, 1123, 1172
NciI	CCSGG	4 cut(s)	391, 819, 1045, 1241
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	416, 595
NmuCI	GTSAC	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	1349
PceI	AGGCCT	1 cut(s)	1327
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	631
PinAI	ACCGGT	2 cut(s)	802, 888
PkrI	GCNGC	5 cut(s)	544, 859, 1125, 1168, 1238
PleI	GAGTC	4 cut(s)	33, 793, 967, 1341
PpsI	GAGTC	4 cut(s)	33, 793, 967, 1341
PshAI	GACNNNNGTC	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	1255
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	1255
PspN4I	GGNNCC	2 cut(s)	416, 595
PspPI	GGNCC	3 cut(s)	70, 508, 517
PsrI	GAACNNNNNNTAC	2 cut(s)	1375, 1407
PsuI	RGATCY	2 cut(s)	414, 742
RsaI	GTAC	2 cut(s)	584, 1384
RsaNI	GTAC	2 cut(s)	583, 1383
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	5 cut(s)	543, 858, 1124, 1167, 1237
Sau3AI	GATC	7 cut(s)	355, 414, 709, 742, 814, 1187, 1195
Sau96I	GGNCC	3 cut(s)	70, 508, 517
SchI	GAGTC	4 cut(s)	33, 794, 967, 1341
ScrFI	CCNGG	5 cut(s)	391, 819, 1045, 1241, 1257
SfaNI	GCATC	2 cut(s)	1126, 1300
Sfr274I	CTCGAG	1 cut(s)	1349
SinI	GGWCC	2 cut(s)	70, 517
SlaI	CTCGAG	1 cut(s)	1349
SmlI	CTYRAG	2 cut(s)	512, 1349
SmoI	CTYRAG	2 cut(s)	512, 1349
Sse9I	AATT	6 cut(s)	652, 1075, 1090, 1129, 1224, 1299
SseBI	AGGCCT	1 cut(s)	1327
SsiI	CCGC	8 cut(s)	83, 121, 210, 421, 475, 543, 1121, 1237
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	1329
StuI	AGGCCT	1 cut(s)	1327
StyD4I	CCNGG	5 cut(s)	389, 817, 1043, 1239, 1255
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	6 cut(s)	326, 497, 679, 1030, 1063, 1211
TaqI	TCGA	5 cut(s)	629, 764, 788, 1186, 1350
TasI	AATT	6 cut(s)	652, 1075, 1090, 1129, 1224, 1299
TauI	GCSGC	2 cut(s)	545, 1239
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	2 cut(s)	682, 1141
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	3 cut(s)	857, 1123, 1166
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	99, 655, 897
TspGWI	ACGGA	2 cut(s)	514, 985
TspRI	CASTG	2 cut(s)	682, 1141
VpaK11BI	GGWCC	2 cut(s)	70, 517
XapI	RAATTY	1 cut(s)	1224
XhoI	CTCGAG	1 cut(s)	1349
XspI	CTAG	1 cut(s)	1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.