pycom16g19590

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
16735619 .. 16738739
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g19590.2

Sequence Viewer

Length: 1368 bp
ATGCAAAACTCCACCCATTCCCCATCGCCACCGCCACCAACACCCACACCAACACCGTCTCCATTTCTCTCCTCCATACCCGCCGCCGCCGCCGCCGCCACCGCCCCCATTCTCTCAATCAAAGACCCCAAAGCCCTCCTCTCAATCATCCTAGTCTCTTCCCTTTTCGCCCTCCTCCTCTTCCTCTCCTCCTCCTCCTCATCATCATTATCCTCCTCCGCCGCCCCCATCCATTCTCGACCCGACCCATTTCTCTTCCCCAACCAGCAAGCCCACCGCATCATTTACCACGACAACAACTCCTCAGATCCCACGCCCCCCTCCATCGCCTACCTCTTGTCTGGGTCAAAAGGCGACTTGGGTCGGATCCTGAGGCTCCTTTACGCCGCTTACCACCCCAGGAACCAGTACCTCCTCCACCTCGACCGGTCCGCTTCCGATTCCGAGCGGGAAAAGTTGGCTCTGAGAGTCCAATCACTGCCCATTTTCAGAGCTGCCCAGAATGTCCATGTCATTGGTAAGGCTGATTTTGTGTACCCAACTGGGTCTTCTGCTATCTCTTTTACCCTCCATGGCGCCTCGATACTTCTGCGTCTGTCGCCAAATTGGGATTGGTTTATCAGCCTCAGTGTTCGTGATTACCCACTAATCACACAGGATGATCTTCTTCACATTATGTCGTTCTTGCCTAAAGATCTCAACTTTGTGAACCATTCAAGTTATATCGGCTGGAGAGAGTCTAGGAGATTGAGACCGATAATTGTTGATCCGTGGCTTTATCTTTCGGAGAAAACTGACATGTTCTATGCTACACAGAAAAGGGTGTTGCCTAACGCTTACCGGTTGTTCTCTGGTTCTTCTTTTACGATTCTGAGTCGCAATTTCATTGAATTTTGTGTTGTCGGTATTGATAACCTGCCAAGGACTTTGTTGATGTACTTCTCAAACACGCCTTCTGCTCTTTCGAATTACTTCCCTACCATTCTTTGCAACTCCCAGCAGTTCAATAAGACTATCATAAACCATAACTTAGTATATGCTAATTCTGAGACACCCCCTAGAGAGAAGCCCCAGCCAATCAGTTCCGCTGATTATGATGCTATGATTCAGCATGGAGCTGCCTTTGCCACTGGACTCGGGGTAGATGATCCGATTCTTGACCGGGTGGATAGAGAAATTTTAAAACGCAGGCGAGGAAAAGTTGTTCCTGGCGGCTGGTGTTTAGGTGGGTTTGCAAACGACACATGTTCAGTCTGGGGGGATGCTGATATTTTGAGGCCTAGTCCACAAGCAAGAAGACTTGAGCAACTTCTAGTCGGATTGCTCTCAAATGGCACATTCCTGTCTCATCAATGTATATACGAGTGA

Protein Analysis

456

Amino Acids

50.52

Weight (kDa)

8.86

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 924
AccB1I GGYRCC 1 cut(s) 575
AccBSI CCGCTC 1 cut(s) 448
AclWI GGATC 5 cut(s) 302, 361, 374, 761, 1142
AcsI RAATTY 2 cut(s) 890, 1176
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 3 cut(s) 410, 536, 938
AflIII ACRYGT 2 cut(s) 798, 1244
AgeI ACCGGT 2 cut(s) 426, 840
AgsI TTSAA 3 cut(s) 717, 890, 1006
AjnI CCWGG 2 cut(s) 398, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 532, 564
AloI GAACNNNNNNTCC 2 cut(s) 1188, 1220
AluBI AGCT 2 cut(s) 494, 1118
AluI AGCT 2 cut(s) 494, 1118
Alw26I GTCTC 5 cut(s) 63, 160, 745, 1043, 1350
AlwI GGATC 5 cut(s) 302, 361, 374, 761, 1142
Ama87I CYCGRG 1 cut(s) 1136
AoxI GGCC 1 cut(s) 1277
ApeKI GCWGC 2 cut(s) 494, 1118
ApoI RAATTY 2 cut(s) 890, 1176
AsiGI ACCGGT 2 cut(s) 426, 840
Asp700I GAANNNNTTC 1 cut(s) 971
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 1163
AsuII TTCGAA 1 cut(s) 965
AvaI CYCGRG 1 cut(s) 1136
AvaII GGWCC 1 cut(s) 429
AxyI CCTNAGG 1 cut(s) 371
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 575
BbsI GAAGAC 2 cut(s) 540, 1303
BbvI GCAGC 2 cut(s) 481, 1105
BccI CCATC 3 cut(s) 31, 236, 332
BcgI CGANNNNNNTGC 2 cut(s) 571, 605
BciT130I CCWGG 2 cut(s) 400, 1209
BcnI CCSGG 1 cut(s) 1163
BcoDI GTCTC 5 cut(s) 63, 160, 745, 1043, 1350
BfaI CTAG 5 cut(s) 152, 741, 1059, 1281, 1313
BfoI RGCGCY 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 924
BglII AGATCT 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 400, 1163, 1209
Bme18I GGWCC 1 cut(s) 429
BmeT110I CYCGRG 1 cut(s) 1136
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 4 cut(s) 368, 377, 404, 577
BmrFI CCNGG 3 cut(s) 400, 1163, 1209
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 3 cut(s) 288, 1087, 1252
BmuI ACTGGG 1 cut(s) 552
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 2 cut(s) 540, 1303
BpmI CTGGAG 1 cut(s) 751
Bpu14I TTCGAA 1 cut(s) 965
BpuEI CTTGAG 1 cut(s) 1322
BpuMI CCSGG 1 cut(s) 1163
BsaHI GRCGYC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 745
BsaJI CCNNGG 4 cut(s) 398, 571, 770, 920
BsaWI WCCGGW 2 cut(s) 426, 840
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 284, 314
Bse118I RCCGGY 2 cut(s) 426, 840
Bse1I ACTGG 3 cut(s) 406, 547, 1135
Bse21I CCTNAGG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 400, 1209
BseDI CCNNGG 4 cut(s) 398, 571, 770, 920
BseGI GGATG 4 cut(s) 147, 228, 664, 1267
BseMII CTCAG 6 cut(s) 318, 362, 455, 640, 863, 1038
BseNI ACTGG 3 cut(s) 406, 547, 1135
BseXI GCAGC 2 cut(s) 481, 1105
BseYI CCCAGC 2 cut(s) 996, 1071
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 1279
BshNI GGYRCC 1 cut(s) 575
BshTI ACCGGT 2 cut(s) 426, 840
BsiEI CGRYCG 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 1136
BsiSI CCGG 3 cut(s) 427, 841, 1162
BsmAI GTCTC 5 cut(s) 63, 160, 745, 1043, 1350
BsmBI CGTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 1279
Bso31I GGTCTC 1 cut(s) 745
BsoBI CYCGRG 1 cut(s) 1136
Bsp119I TTCGAA 1 cut(s) 965
Bsp143I GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
Bsp19I CCATGG 1 cut(s) 571
BspANI GGCC 1 cut(s) 1279
BspCNI CTCAG 6 cut(s) 317, 363, 456, 639, 864, 1039
BspLI GGNNCC 4 cut(s) 368, 377, 404, 577
BspMI ACCTGC 1 cut(s) 924
BspPI GGATC 5 cut(s) 302, 361, 374, 761, 1142
BspT104I TTCGAA 1 cut(s) 965
BspT107I GGYRCC 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 745
BsrBI CCGCTC 1 cut(s) 448
BsrFI RCCGGY 2 cut(s) 426, 840
BsrI ACTGG 3 cut(s) 406, 547, 1135
BssAI RCCGGY 2 cut(s) 426, 840
BssECI CCNNGG 4 cut(s) 398, 571, 770, 920
BssMI GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 2 cut(s) 571, 920
Bst2UI CCWGG 2 cut(s) 400, 1209
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 3 cut(s) 163, 185, 260
BstACI GRCGYC 1 cut(s) 576
BstBI TTCGAA 1 cut(s) 965
BstC8I GCNNGC 2 cut(s) 270, 1190
BstDEI CTNAG 7 cut(s) 304, 371, 464, 626, 872, 1030, 1047
BstDSI CCRYGG 2 cut(s) 571, 770
BstF5I GGATG 4 cut(s) 147, 228, 664, 1267
BstH2I RGCGCY 1 cut(s) 579
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 6 cut(s) 310, 369, 664, 697, 769, 1150
BstMAI GTCTC 5 cut(s) 63, 160, 745, 1043, 1350
BstMBI GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 6 cut(s) 89, 92, 95, 101, 598, 1124
BstNI CCWGG 2 cut(s) 400, 1209
BstNSI RCATGY 2 cut(s) 802, 1248
BstPAI GACNNNNGTC 1 cut(s) 360
BstSCI CCNGG 3 cut(s) 398, 1161, 1207
BstV1I GCAGC 2 cut(s) 481, 1105
BstV2I GAAGAC 2 cut(s) 540, 1303
BstX2I RGATCY 3 cut(s) 307, 366, 694
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 3 cut(s) 307, 366, 694
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 1279
BtgI CCRYGG 2 cut(s) 571, 770
BtgZI GCGATG 2 cut(s) 9, 310
BtsCI GGATG 4 cut(s) 147, 228, 664, 1267
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 3 cut(s) 476, 634, 1128
BveI ACCTGC 1 cut(s) 924
Cac8I GCNNGC 2 cut(s) 270, 1190
CfoI GCGC 1 cut(s) 578
Cfr10I RCCGGY 2 cut(s) 426, 840
Cfr13I GGNCC 1 cut(s) 429
CpoI CGGWCCG 1 cut(s) 429
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 409, 535, 937
CspAI ACCGGT 2 cut(s) 426, 840
CspI CGGWCCG 1 cut(s) 429
CviAII CATG 5 cut(s) 509, 572, 799, 1112, 1245
CviQI GTAC 3 cut(s) 409, 535, 937
DdeI CTNAG 7 cut(s) 304, 371, 464, 626, 872, 1030, 1047
DinI GGCGCC 1 cut(s) 577
DpnI GATC 6 cut(s) 309, 368, 663, 696, 768, 1149
DpnII GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
DraI TTTAAA 1 cut(s) 1182
Eam1104I CTCTTC 3 cut(s) 163, 185, 260
EarI CTCTTC 3 cut(s) 163, 185, 260
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 571, 920
Eco147I AGGCCT 1 cut(s) 1279
Eco31I GGTCTC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 1136
EcoRII CCWGG 2 cut(s) 398, 1207
EcoT14I CCWWGG 2 cut(s) 571, 920
EgeI GGCGCC 1 cut(s) 577
EheI GGCGCC 1 cut(s) 577
ErhI CCWWGG 2 cut(s) 571, 920
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 5 cut(s) 512, 575, 802, 1115, 1248
FatI CATG 5 cut(s) 508, 571, 798, 1111, 1244
FauI CCCGC 2 cut(s) 88, 441
FokI GGATG 4 cut(s) 134, 215, 671, 1274
FspBI CTAG 5 cut(s) 152, 741, 1059, 1281, 1313
GlaI GCGC 1 cut(s) 577
GsaI CCCAGC 2 cut(s) 1000, 1075
GsuI CTGGAG 1 cut(s) 751
HaeII RGCGCY 1 cut(s) 579
HaeIII GGCC 1 cut(s) 1279
HapII CCGG 3 cut(s) 427, 841, 1162
HgaI GACGC 1 cut(s) 581
HhaI GCGC 1 cut(s) 578
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 5 cut(s) 512, 575, 802, 1115, 1248
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HinfI GANTC 8 cut(s) 440, 468, 737, 868, 874, 1105, 1134, 1153
HpaII CCGG 3 cut(s) 427, 841, 1162
Hpy166II GTNNAC 3 cut(s) 535, 709, 1286
Hpy188III TCNNGA 4 cut(s) 237, 370, 635, 1157
Hpy8I GTNNAC 3 cut(s) 535, 709, 1286
HpyAV CCTTC 1 cut(s) 963
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 4, 990, 1235
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 92, 95, 101, 598, 1124
HpyF3I CTNAG 7 cut(s) 304, 371, 464, 626, 872, 1030, 1047
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 5 cut(s) 512, 575, 802, 1115, 1248
HspAI GCGC 1 cut(s) 576
KasI GGCGCC 1 cut(s) 575
Kzo9I GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
LmnI GCTCC 2 cut(s) 381, 1115
Lsp1109I GCAGC 2 cut(s) 481, 1105
LweI GCATC 3 cut(s) 288, 1087, 1252
MaeI CTAG 5 cut(s) 152, 741, 1059, 1281, 1313
MalI GATC 6 cut(s) 309, 368, 663, 696, 768, 1149
MbiI CCGCTC 1 cut(s) 448
MboI GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
MboII GAAGA 8 cut(s) 150, 172, 247, 540, 656, 659, 849, 1308
MflI RGATCY 3 cut(s) 307, 366, 694
MluCI AATT 7 cut(s) 604, 759, 880, 890, 967, 1042, 1176
Mly113I GGCGCC 1 cut(s) 576
MlyI GAGTC 4 cut(s) 477, 746, 883, 1128
MmeI TCCRAC 2 cut(s) 344, 1297
MroXI GAANNNNTTC 1 cut(s) 971
MseI TTAA 1 cut(s) 1181
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 3 cut(s) 427, 841, 1162
MspR9I CCNGG 3 cut(s) 400, 1163, 1209
MvaI CCWGG 2 cut(s) 400, 1209
MwoI GCNNNNNNNGC 6 cut(s) 89, 92, 95, 101, 598, 1124
NarI GGCGCC 1 cut(s) 576
NciI CCSGG 1 cut(s) 1163
NcoI CCATGG 1 cut(s) 571
NdeII GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
NlaIII CATG 5 cut(s) 512, 575, 802, 1115, 1248
NlaIV GGNNCC 4 cut(s) 368, 377, 404, 577
NspI RCATGY 2 cut(s) 802, 1248
NspV TTCGAA 1 cut(s) 965
PceI AGGCCT 1 cut(s) 1279
PciI ACATGT 2 cut(s) 798, 1244
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 4 cut(s) 440, 868, 1105, 1153
PinAI ACCGGT 2 cut(s) 426, 840
PleI GAGTC 4 cut(s) 476, 745, 882, 1128
PluTI GGCGCC 1 cut(s) 579
PpsI GAGTC 4 cut(s) 476, 745, 882, 1128
PscI ACATGT 2 cut(s) 798, 1244
PshAI GACNNNNGTC 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 398, 1207
PspFI CCCAGC 2 cut(s) 996, 1071
PspGI CCWGG 2 cut(s) 398, 1207
PspN4I GGNNCC 4 cut(s) 368, 377, 404, 577
PspPI GGNCC 1 cut(s) 429
PsuI RGATCY 3 cut(s) 307, 366, 694
RsaI GTAC 3 cut(s) 410, 536, 938
RsaNI GTAC 3 cut(s) 409, 535, 937
Rsr2I CGGWCCG 1 cut(s) 429
RsrII CGGWCCG 1 cut(s) 429
SaqAI TTAA 1 cut(s) 1181
Sau3AI GATC 6 cut(s) 307, 366, 661, 694, 766, 1147
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 4 cut(s) 477, 746, 883, 1128
ScrFI CCNGG 3 cut(s) 400, 1163, 1209
SetI ASST 7 cut(s) 336, 414, 423, 496, 918, 1120, 1228
SfaNI GCATC 3 cut(s) 288, 1087, 1252
SfoI GGCGCC 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 965
SinI GGWCC 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
Sse9I AATT 7 cut(s) 604, 759, 880, 890, 967, 1042, 1176
SseBI AGGCCT 1 cut(s) 1279
SspDI GGCGCC 1 cut(s) 575
SspMI CTAG 5 cut(s) 152, 741, 1059, 1281, 1313
StuI AGGCCT 1 cut(s) 1279
StyD4I CCNGG 3 cut(s) 398, 1161, 1207
StyI CCWWGG 2 cut(s) 571, 920
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 4 cut(s) 238, 423, 581, 965
TaqII GACCGA 1 cut(s) 769
TasI AATT 7 cut(s) 604, 759, 880, 890, 967, 1042, 1176
TatI WGTACW 1 cut(s) 936
TauI GCSGC 8 cut(s) 86, 89, 92, 95, 98, 224, 389, 1215
TfiI GAWTC 4 cut(s) 440, 868, 1105, 1153
Tru1I TTAA 1 cut(s) 1181
Tru9I TTAA 1 cut(s) 1181
TscAI CASTG 3 cut(s) 483, 634, 1135
TseI GCWGC 2 cut(s) 494, 1118
TspDTI ATGAA 1 cut(s) 874
TspGWI ACGGA 1 cut(s) 759
TspRI CASTG 3 cut(s) 483, 634, 1135
VpaK11BI GGWCC 1 cut(s) 429
XapI RAATTY 2 cut(s) 890, 1176
XceI RCATGY 2 cut(s) 802, 1248
XcmI CCANNNNNNNNNTGG 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 5 cut(s) 152, 741, 1059, 1281, 1313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.