MD16G1235200.v1.1

Xylosyltransferase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
24187654 .. 24191126
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1235200.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGCAAAACTCCACCCATTCCCCATCGCCACCGCCACCAACACCGTCTCCATTTCTCTCCTCCACACCCACCGCCGCCGCCGCCACCATCCCCATTCTCTCAATCAAAGACCCCAAAGCCCTCCTCTCAATCATCCTAGTCTCTTCCCTTTTCGCCCTCCTCCTCTTCCTCTCCTCCTCCTCCTCATCATCATTATCCTCCTCCGCCGCCCTCATTCATTCTCGACCCGACCCATTTCTCTTCCCCAACCAGCAAGCCCACCGCATCATTTACCACGACAACAACTCCTCAGATCCCACGCCCCCCTCCATCGCCTACCTCTTGTCAGGGTCAAAAGGCGACTTGGGTCGGATCCTGAGGCTCCTCTACGCCGCTTACCACCCCAGGAACCAGTACCTCCTCCACCTTGACCGGTCCGCTTCCGATTCCGAGCGGGAAAAGTTGGCTCTGAGAGTCCAATCACTGCCCATTTTCAGAGCTGCCCAGAATGTCCATGTCATTGGTAAGGCTGATTTTGTGTACCCAACTGGGTCTTCTGCTATCTCTTTTACGCTCCATGGCGCCTCGATACTTATGCGTCTGTCGCCAAATTGGGATTGGTTTATCAGCCTCAGTGTTCGTGATTACCCACTAATCACACAGGATGATCTTCTTCACATTATGTCGTTCTTGCCTAAAGATCTCAACTTTGTGAACCATTCAAGTTATATCGGCTGGAGAGAGTCTAGGAGATTAAGACCGATAATTGTTGATCCGGGGCTTTATCTTTCGGAGAAAACTGACATGTTCTATGCTACACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTCTCGGGTTCTTCTTTTACGATTCTGAGTCGCAATTTCATTGAATTTTGTGTTGTTGGTATTGATAACCTGCCAAGGACTTTGTTGATGTACTTCTCAAACACACCTTCTGCTCTTTCGAATTACTTCCCTACCATTCTTTGCAACTCCCAGCAGTTCAATAAGACTATCATAAACCATAACTTAGTATATGCTAATTCCGAGACACCCCCTAGAGAGAAGCCCCAGCCAATCAGTTCCGCTGATTATGATGCTATGATTCAGCATGGAGCTGCCTTTGTCACTGGACTCCGGGTAGATGATCCGATTCTTGACCGGGTGGATAGAGAAATTTTAAAACGCAGGCGAGGAAAAGTTGTTCCTGGCGGCTGGTGTTTAGGTGGGTTTGCAAACGACACTTGTTCGGTCTGGGGGGATGCTGATATTTTGAGGCCTAGTCCACAAGCAAGAAGACTTGAGCAACTTTTAGTCGGATTGCTCTCAAATGGCACATTCCTGTCTCATCAATGTATATACGAGTGA

Protein Analysis

451

Amino Acids

50.15

Weight (kDa)

8.99

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 104 - 359 7.8e-60 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 909
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 433
AclWI GGATC 5 cut(s) 287, 346, 359, 746, 1127
AcsI RAATTY 2 cut(s) 875, 1161
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 3 cut(s) 395, 521, 923
AflIII ACRYGT 1 cut(s) 783
AgeI ACCGGT 2 cut(s) 411, 825
AgsI TTSAA 3 cut(s) 702, 875, 991
AjnI CCWGG 2 cut(s) 383, 1192
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 2 cut(s) 479, 1103
AluI AGCT 2 cut(s) 479, 1103
Alw26I GTCTC 4 cut(s) 51, 145, 1028, 1335
AlwI GGATC 5 cut(s) 287, 346, 359, 746, 1127
Ama87I CYCGRG 1 cut(s) 835
AoxI GGCC 1 cut(s) 1262
ApeKI GCWGC 2 cut(s) 479, 1103
ApoI RAATTY 2 cut(s) 875, 1161
AsiGI ACCGGT 2 cut(s) 411, 825
Asp700I GAANNNNTTC 1 cut(s) 956
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 3 cut(s) 756, 1124, 1148
AsuII TTCGAA 1 cut(s) 950
AvaI CYCGRG 1 cut(s) 835
AvaII GGWCC 1 cut(s) 414
AxyI CCTNAGG 1 cut(s) 356
BamHI GGATCC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 560
BbsI GAAGAC 2 cut(s) 525, 1288
BbvI GCAGC 2 cut(s) 466, 1090
BccI CCATC 3 cut(s) 31, 95, 317
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 2 cut(s) 385, 1194
BcnI CCSGG 3 cut(s) 756, 1124, 1148
BcoDI GTCTC 4 cut(s) 51, 145, 1028, 1335
BfaI CTAG 4 cut(s) 137, 726, 1044, 1266
BfoI RGCGCY 1 cut(s) 564
BfuAI ACCTGC 1 cut(s) 909
BglII AGATCT 1 cut(s) 679
BisI GCNGC 8 cut(s) 75, 78, 81, 207, 372, 480, 1104, 1198
BlsI GCNGC 8 cut(s) 76, 79, 82, 208, 373, 481, 1105, 1199
Bme1390I CCNGG 5 cut(s) 385, 756, 1124, 1148, 1194
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 835
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 4 cut(s) 353, 362, 389, 562
BmrFI CCNGG 5 cut(s) 385, 756, 1124, 1148, 1194
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 3 cut(s) 273, 1072, 1237
BmuI ACTGGG 1 cut(s) 537
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 525, 1288
BpmI CTGGAG 1 cut(s) 736
Bpu14I TTCGAA 1 cut(s) 950
BpuEI CTTGAG 1 cut(s) 1307
BpuMI CCSGG 3 cut(s) 756, 1124, 1148
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 4 cut(s) 383, 556, 755, 905
BsaWI WCCGGW 2 cut(s) 411, 825
BsaXI ACNNNNNCTCC 4 cut(s) 31, 61, 269, 299
Bse118I RCCGGY 2 cut(s) 411, 825
Bse1I ACTGG 3 cut(s) 391, 532, 1120
Bse21I CCTNAGG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 385, 1194
BseDI CCNNGG 4 cut(s) 383, 556, 755, 905
BseGI GGATG 4 cut(s) 87, 132, 649, 1252
BseMII CTCAG 5 cut(s) 303, 347, 440, 625, 848
BseNI ACTGG 3 cut(s) 391, 532, 1120
BseXI GCAGC 2 cut(s) 466, 1090
BseYI CCCAGC 2 cut(s) 981, 1056
BshFI GGCC 1 cut(s) 1264
BshNI GGYRCC 1 cut(s) 560
BshTI ACCGGT 2 cut(s) 411, 825
BsiHKCI CYCGRG 1 cut(s) 835
BsiSI CCGG 5 cut(s) 412, 755, 826, 1123, 1147
BsmAI GTCTC 4 cut(s) 51, 145, 1028, 1335
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 1264
BsoBI CYCGRG 1 cut(s) 835
Bsp119I TTCGAA 1 cut(s) 950
Bsp143I GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
Bsp19I CCATGG 1 cut(s) 556
BspANI GGCC 1 cut(s) 1264
BspCNI CTCAG 5 cut(s) 302, 348, 441, 624, 849
BspLI GGNNCC 4 cut(s) 353, 362, 389, 562
BspMI ACCTGC 1 cut(s) 909
BspPI GGATC 5 cut(s) 287, 346, 359, 746, 1127
BspT104I TTCGAA 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 560
BsrBI CCGCTC 1 cut(s) 433
BsrFI RCCGGY 2 cut(s) 411, 825
BsrI ACTGG 3 cut(s) 391, 532, 1120
BssAI RCCGGY 2 cut(s) 411, 825
BssECI CCNNGG 4 cut(s) 383, 556, 755, 905
BssMI GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 2 cut(s) 556, 905
Bst2UI CCWGG 2 cut(s) 385, 1194
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 3 cut(s) 148, 170, 245
BstACI GRCGYC 1 cut(s) 561
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 2 cut(s) 255, 1175
BstDEI CTNAG 6 cut(s) 289, 356, 449, 611, 857, 1015
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 4 cut(s) 87, 132, 649, 1252
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 6 cut(s) 295, 354, 649, 682, 754, 1135
BstMAI GTCTC 4 cut(s) 51, 145, 1028, 1335
BstMBI GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 80, 583
BstNI CCWGG 2 cut(s) 385, 1194
BstNSI RCATGY 1 cut(s) 787
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 5 cut(s) 383, 754, 1122, 1146, 1192
BstV1I GCAGC 2 cut(s) 466, 1090
BstV2I GAAGAC 2 cut(s) 525, 1288
BstX2I RGATCY 3 cut(s) 292, 351, 679
BstXI CCANNNNNNTGG 1 cut(s) 500
BstYI RGATCY 3 cut(s) 292, 351, 679
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 1264
BtgI CCRYGG 1 cut(s) 556
BtgZI GCGATG 2 cut(s) 9, 295
BtsCI GGATG 4 cut(s) 87, 132, 649, 1252
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 3 cut(s) 461, 619, 1113
BveI ACCTGC 1 cut(s) 909
Cac8I GCNNGC 2 cut(s) 255, 1175
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 2 cut(s) 411, 825
Cfr13I GGNCC 1 cut(s) 414
CpoI CGGWCCG 1 cut(s) 414
CseI GACGC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 394, 520, 922
CspAI ACCGGT 2 cut(s) 411, 825
CspI CGGWCCG 1 cut(s) 414
CviAII CATG 4 cut(s) 494, 557, 784, 1097
CviQI GTAC 3 cut(s) 394, 520, 922
DdeI CTNAG 6 cut(s) 289, 356, 449, 611, 857, 1015
DinI GGCGCC 1 cut(s) 562
DpnI GATC 6 cut(s) 294, 353, 648, 681, 753, 1134
DpnII GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
DraI TTTAAA 1 cut(s) 1167
Eam1104I CTCTTC 3 cut(s) 148, 170, 245
EarI CTCTTC 3 cut(s) 148, 170, 245
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 556, 905
Eco147I AGGCCT 1 cut(s) 1264
Eco47I GGWCC 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 383, 1192
EcoT14I CCWWGG 2 cut(s) 556, 905
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 556, 905
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 4 cut(s) 497, 560, 787, 1100
FatI CATG 4 cut(s) 493, 556, 783, 1096
FauI CCCGC 1 cut(s) 426
Fnu4HI GCNGC 8 cut(s) 75, 78, 81, 207, 372, 480, 1104, 1198
FokI GGATG 4 cut(s) 74, 119, 656, 1259
Fsp4HI GCNGC 8 cut(s) 75, 78, 81, 207, 372, 480, 1104, 1198
FspBI CTAG 4 cut(s) 137, 726, 1044, 1266
GlaI GCGC 1 cut(s) 562
GluI GCNGC 8 cut(s) 75, 78, 81, 207, 372, 480, 1104, 1198
GsaI CCCAGC 2 cut(s) 985, 1060
GsuI CTGGAG 1 cut(s) 736
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 1 cut(s) 1264
HapII CCGG 5 cut(s) 412, 755, 826, 1123, 1147
HgaI GACGC 1 cut(s) 566
HhaI GCGC 1 cut(s) 563
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 4 cut(s) 497, 560, 787, 1100
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HinfI GANTC 8 cut(s) 425, 453, 722, 853, 859, 1090, 1119, 1138
HpaII CCGG 5 cut(s) 412, 755, 826, 1123, 1147
Hpy166II GTNNAC 3 cut(s) 520, 694, 1271
Hpy188III TCNNGA 4 cut(s) 222, 355, 620, 1142
Hpy8I GTNNAC 3 cut(s) 520, 694, 1271
HpyAV CCTTC 1 cut(s) 948
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 4, 975, 1220
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 583
HpyF3I CTNAG 6 cut(s) 289, 356, 449, 611, 857, 1015
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 4 cut(s) 497, 560, 787, 1100
HspAI GCGC 1 cut(s) 561
KasI GGCGCC 1 cut(s) 560
Kzo9I GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
LmnI GCTCC 3 cut(s) 366, 558, 1100
Lsp1109I GCAGC 2 cut(s) 466, 1090
LweI GCATC 3 cut(s) 273, 1072, 1237
MaeI CTAG 4 cut(s) 137, 726, 1044, 1266
MaeIII GTNAC 1 cut(s) 1111
MalI GATC 6 cut(s) 294, 353, 648, 681, 753, 1134
MbiI CCGCTC 1 cut(s) 433
MboI GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
MboII GAAGA 8 cut(s) 135, 157, 232, 525, 641, 644, 834, 1293
MflI RGATCY 3 cut(s) 292, 351, 679
MluCI AATT 7 cut(s) 589, 744, 865, 875, 952, 1027, 1161
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 4 cut(s) 462, 731, 868, 1113
MmeI TCCRAC 2 cut(s) 329, 1282
MroXI GAANNNNTTC 1 cut(s) 956
MseI TTAA 2 cut(s) 734, 1166
MspA1I CMGCKG 1 cut(s) 1073
MspI CCGG 5 cut(s) 412, 755, 826, 1123, 1147
MspR9I CCNGG 5 cut(s) 385, 756, 1124, 1148, 1194
MvaI CCWGG 2 cut(s) 385, 1194
MwoI GCNNNNNNNGC 2 cut(s) 80, 583
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 3 cut(s) 756, 1124, 1148
NcoI CCATGG 1 cut(s) 556
NdeII GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
NlaIII CATG 4 cut(s) 497, 560, 787, 1100
NlaIV GGNNCC 4 cut(s) 353, 362, 389, 562
NmuCI GTSAC 1 cut(s) 1111
NspI RCATGY 1 cut(s) 787
NspV TTCGAA 1 cut(s) 950
PceI AGGCCT 1 cut(s) 1264
PciI ACATGT 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 956
PfeI GAWTC 4 cut(s) 425, 853, 1090, 1138
PinAI ACCGGT 2 cut(s) 411, 825
PkrI GCNGC 8 cut(s) 76, 79, 82, 208, 373, 481, 1105, 1199
PleI GAGTC 4 cut(s) 461, 730, 867, 1113
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 4 cut(s) 461, 730, 867, 1113
PscI ACATGT 1 cut(s) 783
PshAI GACNNNNGTC 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 383, 1192
PspFI CCCAGC 2 cut(s) 981, 1056
PspGI CCWGG 2 cut(s) 383, 1192
PspN4I GGNNCC 4 cut(s) 353, 362, 389, 562
PspPI GGNCC 1 cut(s) 414
PsuI RGATCY 3 cut(s) 292, 351, 679
RsaI GTAC 3 cut(s) 395, 521, 923
RsaNI GTAC 3 cut(s) 394, 520, 922
Rsr2I CGGWCCG 1 cut(s) 414
RsrII CGGWCCG 1 cut(s) 414
SaqAI TTAA 2 cut(s) 734, 1166
SatI GCNGC 8 cut(s) 75, 78, 81, 207, 372, 480, 1104, 1198
Sau3AI GATC 6 cut(s) 292, 351, 646, 679, 751, 1132
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 4 cut(s) 462, 731, 868, 1113
ScrFI CCNGG 5 cut(s) 385, 756, 1124, 1148, 1194
SetI ASST 8 cut(s) 321, 399, 408, 481, 903, 940, 1105, 1213
SfaNI GCATC 3 cut(s) 273, 1072, 1237
SfoI GGCGCC 1 cut(s) 562
SfuI TTCGAA 1 cut(s) 950
SinI GGWCC 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 1286
SmoI CTYRAG 1 cut(s) 1286
Sse9I AATT 7 cut(s) 589, 744, 865, 875, 952, 1027, 1161
SseBI AGGCCT 1 cut(s) 1264
SspDI GGCGCC 1 cut(s) 560
SspMI CTAG 4 cut(s) 137, 726, 1044, 1266
StuI AGGCCT 1 cut(s) 1264
StyD4I CCNGG 5 cut(s) 383, 754, 1122, 1146, 1192
StyI CCWWGG 2 cut(s) 556, 905
TaaI ACNGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 223, 566, 950
TaqII GACCGA 2 cut(s) 754, 1225
TasI AATT 7 cut(s) 589, 744, 865, 875, 952, 1027, 1161
TatI WGTACW 1 cut(s) 921
TauI GCSGC 6 cut(s) 77, 80, 83, 209, 374, 1200
TfiI GAWTC 4 cut(s) 425, 853, 1090, 1138
Tru1I TTAA 2 cut(s) 734, 1166
Tru9I TTAA 2 cut(s) 734, 1166
TscAI CASTG 3 cut(s) 468, 619, 1120
TseFI GTSAC 1 cut(s) 1111
TseI GCWGC 2 cut(s) 479, 1103
Tsp45I GTSAC 1 cut(s) 1111
TspDTI ATGAA 2 cut(s) 206, 859
TspRI CASTG 3 cut(s) 468, 619, 1120
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 2 cut(s) 875, 1161
XceI RCATGY 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 956
XspI CTAG 4 cut(s) 137, 726, 1044, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.