Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

57291874 .. 57292679

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTCATTGCTGCCCAAAGATCTGAACTTTGTGAATCATTGGAGTTACATTGGCTGGAAAGTGTCGAAGAGATTGAAACAGGACATTGTTGATCAGGAGGTTAATCTTTCTGAGAAAAATGTGATGTTCTATGCGGCACAGAATAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGTTCGTTTCCTTTCCTTACTTGGTTACATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

70

Amino Acids

8.33

Weight (kDa)

9.52

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	134
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	10
AsiGI	ACCGGT	1 cut(s)	165
BclI	TGATCA	1 cut(s)	91
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	11, 135
BlsI	GCNGC	2 cut(s)	12, 136
BsaWI	WCCGGW	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	5
BseMI	GCAATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	102
BshTI	ACCGGT	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	19, 91
BspACI	CCGC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssMI	GATC	2 cut(s)	19, 91
Bst6I	CTCTTC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	22, 94
BstMBI	GATC	2 cut(s)	19, 91
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	165
CspAI	ACCGGT	1 cut(s)	165
CviJI	RGCY	1 cut(s)	54
CviKI_1	RGCY	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	21, 93
DpnII	GATC	2 cut(s)	19, 91
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
FaiI	YATR	2 cut(s)	132, 207
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	11, 135
Fsp4HI	GCNGC	2 cut(s)	11, 135
GluI	GCNGC	2 cut(s)	11, 135
HapII	CCGG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	24, 112
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	19, 91
LpnPI	CCDG	5 cut(s)	40, 65, 80, 162, 179
MaeIII	GTNAC	2 cut(s)	44, 201
MalI	GATC	2 cut(s)	21, 93
MboI	GATC	2 cut(s)	19, 91
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	19
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	2 cut(s)	102, 211
MspI	CCGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	19, 91
PfeI	GAWTC	1 cut(s)	34
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	12, 136
PsuI	RGATCY	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	102, 211
SatI	GCNGC	2 cut(s)	11, 135
Sau3AI	GATC	2 cut(s)	19, 91
SetI	ASST	2 cut(s)	102, 181
SgeI	CNNG	5 cut(s)	67, 92, 107, 178, 189
SsiI	CCGC	1 cut(s)	134
TaqI	TCGA	1 cut(s)	65
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	102, 211
Tru9I	TTAA	2 cut(s)	102, 211
TseI	GCWGC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.