Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

22508299 .. 22526071

Gene Structure 17773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG241000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGTCGGCGAGGCCCAGAGCCACCACCGGACGAAGAACGATCGTGCAAAAACCGCCGCCGACTTTGCTTAGGAGGCCTGAGACGCAAAGCAGCACCACCGGGTCTAAAGGCGAGTTGGGCCGGATCCTCTGCCTCCTCTACGCCACCTACCACCCCAGAAATCAATACCTCCTCCACCTCGACCGCTTTGCTTCCCAGACTGACCGTGACCAGTTAGCCCTCAAGGTCCGATCTGTTCCCATTTTCAGAGCCGCCCAGAATGTCCATCTCATCGGTAAAGCTGACTTTGTCTACCGAAAAGGGTCGTCTTCGATCTCGTTCACTCTCCACGGCGCGTCGATTCTGCTCCGGTTGTCAACCAATTGGGACTGGTTCATAAGCTTCACTGTTGATGACTACCCACTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTCCTGCCCAAAGATCTGAACTTTGTGAATCATTCGAGTTACATTGGCTGGAAAGAGTCGAAGAGATTGAAACAGGTCATTGTTGATCTGGAGCTTTATCTTTCTGAGAAAAATGTGATGTTCTATGCGGTACAGAAAAGGGTGTTGCCTAATGCTTACCGGTTGTTTACAGGAGATCGATGGGAAAATGCCTTGATATTGGAGTTTCTGAGAGATGGTGACAAATCTGTGGCAGAGTTGATGGATATTGGGAAACAGTTTCTAGGGAGCAAGTTCTTCGGGGTGTTCAATATCTTGAAAGTTATGGTGCAGTTGCCTGCCACAAAGCTGGAATACTGGACTGTTCAAAAGCAAAAGCATGTGAATTTGATTCATGAGAAAACTGGCAACTCAAGTGGAGAAGCTATCCCATCTGGTCTGCCAGGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

290

Amino Acids

33.11

Weight (kDa)

9.77

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	34 - 208	1.7e-31	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	338
AciI	CCGC	5 cut(s)	56, 59, 187, 255, 569
AclWI	GGATC	2 cut(s)	121, 134
AcsI	RAATTY	1 cut(s)	805
AfaI	GTAC	1 cut(s)	573
AgeI	ACCGGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	511, 730, 739, 788
AjnI	CCWGG	1 cut(s)	862
AluBI	AGCT	6 cut(s)	284, 384, 535, 769, 845, 869
AluI	AGCT	6 cut(s)	284, 384, 535, 769, 845, 869
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	121, 134
AoxI	GGCC	3 cut(s)	14, 77, 121
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	805
AsiGI	ACCGGT	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	15, 121, 229
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	5 cut(s)	276, 615, 650, 676, 859
BceAI	ACGGC	1 cut(s)	349
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 700, 734
BciT130I	CCWGG	1 cut(s)	864
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	704
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	59, 94, 255
BlsI	GCNGC	3 cut(s)	60, 95, 256
Bme1390I	CCNGG	2 cut(s)	103, 864
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	15, 121, 229
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	103, 864
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	551
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	209, 817
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	3 cut(s)	29, 351, 600
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	4 cut(s)	214, 377, 782, 829
BseBI	CCWGG	1 cut(s)	864
BseCI	ATCGAT	1 cut(s)	619
BseDI	CCNNGG	1 cut(s)	331
BseMII	CTCAG	3 cut(s)	72, 537, 641
BseNI	ACTGG	4 cut(s)	214, 377, 782, 829
BseRI	GAGGAG	2 cut(s)	128, 164
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	338
Bsh1285I	CGRYCG	2 cut(s)	45, 187
BshFI	GGCC	3 cut(s)	16, 79, 123
BshTI	ACCGGT	1 cut(s)	600
BshVI	ATCGAT	1 cut(s)	619
BsiEI	CGRYCG	2 cut(s)	45, 187
BsiSI	CCGG	5 cut(s)	30, 102, 124, 352, 601
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	16, 79, 123
Bsp143I	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
BspACI	CCGC	5 cut(s)	56, 59, 187, 255, 569
BspANI	GGCC	3 cut(s)	16, 79, 123
BspCNI	CTCAG	3 cut(s)	73, 538, 642
BspDI	ATCGAT	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	4 cut(s)	214, 377, 782, 829
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	4 cut(s)	209, 391, 699, 784
Bst6I	CTCTTC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	4 cut(s)	71, 81, 546, 650
BstDSI	CCRYGG	1 cut(s)	331
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	8 cut(s)	45, 129, 236, 318, 424, 457, 529, 619
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
BstMCI	CGRYCG	2 cut(s)	45, 187
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 67, 76, 85, 120
BstNI	CCWGG	1 cut(s)	864
BstNSI	RCATGY	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	101, 862
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	126, 454
BstXI	CCANNNNNNTGG	1 cut(s)	769
BstYI	RGATCY	2 cut(s)	126, 454
Bsu15I	ATCGAT	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	16, 79, 123
BsuTUI	ATCGAT	1 cut(s)	619
BtgI	CCRYGG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	759
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	15, 121, 229
ClaI	ATCGAT	1 cut(s)	619
CseI	GACGC	2 cut(s)	94, 327
Csp6I	GTAC	1 cut(s)	572
CspAI	ACCGGT	1 cut(s)	600
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	2 cut(s)	800, 815
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	4 cut(s)	71, 81, 546, 650
DpnI	GATC	8 cut(s)	44, 128, 235, 317, 423, 456, 528, 618
DpnII	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	862
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	2 cut(s)	803, 818
FaiI	YATR	6 cut(s)	380, 437, 567, 746, 801, 816
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	799, 814
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	59, 94, 255
Fsp4HI	GCNGC	3 cut(s)	59, 94, 255
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	59, 94, 255
GsuI	CTGGAG	1 cut(s)	551
HaeIII	GGCC	3 cut(s)	16, 79, 123
HapII	CCGG	5 cut(s)	30, 102, 124, 352, 601
HgaI	GACGC	2 cut(s)	94, 327
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	803, 818
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	4 cut(s)	343, 469, 497, 811
HpaII	CCGG	5 cut(s)	30, 102, 124, 352, 601
HphI	GGTGA	1 cut(s)	671
Hpy166II	GTNNAC	4 cut(s)	295, 324, 360, 609
Hpy188I	TCNGA	5 cut(s)	233, 251, 459, 547, 651
Hpy188III	TCNNGA	3 cut(s)	530, 736, 815
Hpy8I	GTNNAC	4 cut(s)	295, 324, 360, 609
Hpy99I	CGWCG	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	209, 391, 699, 784
HpyCH4V	TGCA	2 cut(s)	49, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 67, 76, 85, 120
HpyF3I	CTNAG	4 cut(s)	71, 81, 546, 650
Hsp92II	CATG	2 cut(s)	803, 818
HspAI	GCGC	1 cut(s)	336
Kzo9I	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
LmnI	GCTCC	4 cut(s)	354, 532, 708, 866
Lsp1109I	GCAGC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	209, 479, 659
MalI	GATC	8 cut(s)	44, 128, 235, 317, 423, 456, 528, 618
MboI	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
MboII	GAAGA	6 cut(s)	48, 303, 416, 419, 514, 709
MfeI	CAATTG	1 cut(s)	364
MflI	RGATCY	2 cut(s)	126, 454
MluCI	AATT	2 cut(s)	364, 805
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	6, 69, 140, 146, 149, 182, 185, 191, 233
MspI	CCGG	5 cut(s)	30, 102, 124, 352, 601
MspR9I	CCNGG	2 cut(s)	103, 864
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	864
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	5 cut(s)	55, 67, 76, 85, 120
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
NlaIII	CATG	2 cut(s)	803, 818
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	2 cut(s)	209, 659
NspI	RCATGY	1 cut(s)	803
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	343, 469, 811
PflFI	GACNNNGTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	60, 95, 256
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	862
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	3 cut(s)	15, 121, 229
PsuI	RGATCY	2 cut(s)	126, 454
PsyI	GACNNNGTC	1 cut(s)	290
PvuI	CGATCG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SatI	GCNGC	3 cut(s)	59, 94, 255
Sau3AI	GATC	8 cut(s)	42, 126, 233, 315, 421, 454, 526, 616
Sau96I	GGNCC	3 cut(s)	15, 121, 229
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	103, 864
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	224, 832
SmoI	CTYRAG	2 cut(s)	224, 832
Sse9I	AATT	2 cut(s)	364, 805
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	5 cut(s)	56, 59, 187, 255, 569
SspMI	CTAG	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	101, 862
TaaI	ACNGT	4 cut(s)	209, 391, 699, 784
TaqI	TCGA	6 cut(s)	183, 314, 341, 476, 500, 619
TasI	AATT	2 cut(s)	364, 805
TauI	GCSGC	2 cut(s)	61, 257
TfiI	GAWTC	3 cut(s)	343, 469, 811
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	209, 659
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	2 cut(s)	209, 659
TspDTI	ATGAA	2 cut(s)	367, 803
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	805
XceI	RCATGY	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.