Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008016.1

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Reverse (-)

6479 .. 8076

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008016.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctgggcgctgggaataaagtcggccgcctaggcggcctaggcggggcgggcggctctggaaggtcggagcctaggcgctttctccctttctgggttcgaaatcaagaaggaacgccgctcctcgatcagtcgattctcagactctcagtctctcaccgagtctccggccagctctctagctctctatctcgttcactctccacggcgcgtcgattctgctccgatcttcttcacattatgtcattcctgcccaaagatctgaactttgtgaatcattcgagttacattggctggaaagagtcgaagagattgaaacaggtcattgttgatctggagctttatctttctgagaaaaatgtgatgttctatgcggtacagaaaagggtgttgcctaatgcttaccgactgatggctctattttttcttgctgaaaatggtgctagcttaggtctctcatctggtgttgtggaagctgatgcaaagcagattgcaaatatggctcgtcagacatttgacaagtatgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

175

Amino Acids

19.38

Weight (kDa)

10.11

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	208
AciI	CCGC	7 cut(s)	25, 33, 42, 47, 51, 116, 371
AcoI	YGGCCR	2 cut(s)	22, 166
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	43, 91, 409
AgsI	TTSAA	1 cut(s)	313
AhdI	GACNNNNNGTC	1 cut(s)	146
AluBI	AGCT	5 cut(s)	172, 180, 337, 444, 473
AluI	AGCT	5 cut(s)	172, 180, 337, 444, 473
Alw26I	GTCTC	3 cut(s)	154, 166, 455
AoxI	GGCC	3 cut(s)	22, 34, 166
AspA2I	CCTAGG	3 cut(s)	28, 37, 71
AspLEI	GCGC	3 cut(s)	8, 78, 208
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	97
AsuNHI	GCTAGC	1 cut(s)	440
AvrII	CCTAGG	3 cut(s)	28, 37, 71
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	154, 166, 455
BfaI	CTAG	5 cut(s)	29, 38, 72, 177, 441
BfoI	RGCGCY	2 cut(s)	9, 79
BglI	GCCNNNNNGGC	2 cut(s)	30, 33
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	25, 34, 52, 116
BlnI	CCTAGG	3 cut(s)	28, 37, 71
BlsI	GCNGC	4 cut(s)	26, 35, 53, 117
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	1 cut(s)	466
BmtI	GCTAGC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	28, 37, 71, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 91, 409
BseDI	CCNNGG	4 cut(s)	28, 37, 71, 201
BseLI	CCNNNNNNNGG	3 cut(s)	43, 91, 409
BseMII	CTCAG	3 cut(s)	151, 159, 339
BseRI	GAGGAG	1 cut(s)	110
BseX3I	CGGCCG	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	3 cut(s)	24, 36, 168
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	3 cut(s)	43, 91, 409
BsmAI	GTCTC	3 cut(s)	154, 166, 455
BsnI	GGCC	3 cut(s)	24, 36, 168
Bso31I	GGTCTC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	124, 223, 256, 328
BspACI	CCGC	7 cut(s)	25, 33, 42, 47, 51, 116, 371
BspANI	GGCC	3 cut(s)	24, 36, 168
BspCNI	CTCAG	3 cut(s)	150, 158, 340
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	69
BspOI	GCTAGC	1 cut(s)	444
BspT104I	TTCGAA	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	28, 37, 71, 201
BssMI	GATC	4 cut(s)	124, 223, 256, 328
BssT1I	CCWWGG	3 cut(s)	28, 37, 71
Bst6I	CTCTTC	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	3 cut(s)	49, 170, 442
BstDEI	CTNAG	4 cut(s)	137, 145, 348, 445
BstDSI	CCRYGG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	208
BstH2I	RGCGCY	2 cut(s)	9, 79
BstHHI	GCGC	3 cut(s)	8, 78, 208
BstKTI	GATC	4 cut(s)	127, 226, 259, 331
BstMAI	GTCTC	3 cut(s)	154, 166, 455
BstMBI	GATC	4 cut(s)	124, 223, 256, 328
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 33, 39, 48, 497
BstUI	CGCG	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	24, 36, 168
BtgI	CCRYGG	1 cut(s)	201
Cac8I	GCNNGC	3 cut(s)	49, 170, 442
CfoI	GCGC	3 cut(s)	8, 78, 208
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	374
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	137, 145, 348, 445
DpnI	GATC	4 cut(s)	126, 225, 258, 330
DpnII	GATC	4 cut(s)	124, 223, 256, 328
DriI	GACNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	22, 166
EagI	CGGCCG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	299
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	3 cut(s)	28, 37, 71
Eco31I	GGTCTC	1 cut(s)	455
Eco52I	CGGCCG	1 cut(s)	22
EcoT14I	CCWWGG	3 cut(s)	28, 37, 71
ErhI	CCWWGG	3 cut(s)	28, 37, 71
FaiI	YATR	5 cut(s)	239, 369, 497, 522, 526
FauI	CCCGC	2 cut(s)	35, 40
Fnu4HI	GCNGC	4 cut(s)	25, 34, 52, 116
Fsp4HI	GCNGC	4 cut(s)	25, 34, 52, 116
FspBI	CTAG	5 cut(s)	29, 38, 72, 177, 441
GlaI	GCGC	3 cut(s)	7, 77, 207
GluI	GCNGC	4 cut(s)	25, 34, 52, 116
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	353
HaeII	RGCGCY	2 cut(s)	9, 79
HaeIII	GGCC	3 cut(s)	24, 36, 168
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	3 cut(s)	8, 78, 208
Hin6I	GCGC	3 cut(s)	6, 76, 206
HinP1I	GCGC	3 cut(s)	6, 76, 206
HinfI	GANTC	6 cut(s)	133, 141, 159, 213, 271, 299
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	6 cut(s)	67, 140, 223, 261, 349, 507
Hpy188III	TCNNGA	3 cut(s)	57, 104, 332
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	2 cut(s)	54, 101
HpyCH4V	TGCA	2 cut(s)	479, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 33, 39, 48, 497
HpyF3I	CTNAG	4 cut(s)	137, 145, 348, 445
HspAI	GCGC	3 cut(s)	6, 76, 206
Kzo9I	GATC	4 cut(s)	124, 223, 256, 328
LmnI	GCTCC	4 cut(s)	67, 123, 224, 334
LpnPI	CCDG	9 cut(s)	42, 76, 178, 182, 260, 277, 302, 317, 444
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	5 cut(s)	29, 38, 72, 177, 441
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	126, 225, 258, 330
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	4 cut(s)	124, 223, 256, 328
MboII	GAAGA	3 cut(s)	218, 221, 316
MflI	RGATCY	1 cut(s)	256
MlyI	GAGTC	3 cut(s)	135, 168, 308
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	131
MspI	CCGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	5 cut(s)	30, 33, 39, 48, 497
NdeII	GATC	4 cut(s)	124, 223, 256, 328
NheI	GCTAGC	1 cut(s)	440
NlaIV	GGNNCC	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	133, 213, 271
PkrI	GCNGC	4 cut(s)	26, 35, 53, 117
PleI	GAGTC	3 cut(s)	135, 167, 307
PpsI	GAGTC	3 cut(s)	135, 167, 307
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	25, 34, 52, 116
Sau3AI	GATC	4 cut(s)	124, 223, 256, 328
SchI	GAGTC	3 cut(s)	135, 168, 308
SetI	ASST	8 cut(s)	65, 174, 182, 321, 339, 446, 451, 475
SfaNI	GCATC	1 cut(s)	466
SfuI	TTCGAA	1 cut(s)	97
SsiI	CCGC	7 cut(s)	25, 33, 42, 47, 51, 116, 371
SspMI	CTAG	5 cut(s)	29, 38, 72, 177, 441
StyI	CCWWGG	3 cut(s)	28, 37, 71
TaqI	TCGA	6 cut(s)	97, 123, 131, 211, 278, 302
TauI	GCSGC	4 cut(s)	27, 36, 54, 118
TfiI	GAWTC	3 cut(s)	133, 213, 271
XmaJI	CCTAGG	3 cut(s)	28, 37, 71
XspI	CTAG	5 cut(s)	29, 38, 72, 177, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.