Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003534

Physical Location & Seq

Genomic Coordinates Forward (+)

16544564 .. 16554494

Gene Structure 9931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00395470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTCTATTTTTTCTTGCTGAAAATGGTGCTAGCTTAGGTCTCTTATCTGGTGTTGTGGAAGTTGATGCAAAGCAGATTGCAAATATGGCTCGTCGGACATTTGACAAAATTATGGAGAAATCAGGTAGAATTGGGTGGGGCATATATGGCATTCGATCAATCCTCTTAGTCGAACATATAATTATGCAGTTGCCTGCCACAAAGATGGAATACCGGACTGTTCAAAAGCAAAAGCATCTTGAGTCTCATATGAACTTTGGTGTGTATCGTGACTTGAACAACTTTGAAAGTGATCCGGAGGAGTTTGCTAAAACCTTGTGTGCAGATTTAGGTGTTCATGACCCCGAAGATGGTATCTACATCGCTTGGTGCCAGCTCGAATCCTCCGCACCGCTGCTCAAACCGAGACAAGTAAAGAATGAGAGAGAGAAGTACAAAGTTGAGAAGCCGACTCCATGGGTTTGTGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006333 GO:0006337 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022411 GO:0031323 GO:0031326 GO:0031498 GO:0032984 GO:0032986 GO:0033554 GO:0034641 GO:0034728 GO:0043044 GO:0043170 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SNF5

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

6.11

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24040
fragaria_vesca	FvH4_4g05540 FvH4_4g05540
malus_domestica	MD13G1229300.v1.1 MD13G1229500.v1.1 MD16G1235200.v1.1
prunus_persica	Prupe.1G057400_v2.0.a1
pyrus_communis	pycom13g20230 pycom16g19590
rosa_chinensis	RchiOBHm_Chr2g0147061 RchiOBHm_Chr4g0396651 RchiOBHm_Chr4g0405401 RchiOBHm_Chr6g0295211
rosa_laevigata	RLG00000009513
rosa_multiflora	Rmu_sc0001167.1_g000024 Rmu_sc0004742.1_g000015 Rmu_sc0006586.1_g000016 Rmu_sc0008016.1_g000002 Rmu_sc0010969.1_g000008
rosa_roxburghii	Rroxscaffold_2G00122980 Rroxscaffold_5G00341510 Rroxscaffold_6G00395470
rosa_rugosa	Rorug03G0348200
rosa_samantha	Rh1AG084400 Rh2AG297100 Rh2BG305700 Rh2CG284100 Rh4AG071000 Rh4BG069000 Rh4CG076800 Rh4DG066200 Rh5DG128700 Rh7CG241000
rosa_wichuraiana	Rw2G023630 Rw4G005670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	298
AciI	CCGC	2 cut(s)	390, 395
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	4 cut(s)	227, 280, 290, 473
AluBI	AGCT	2 cut(s)	36, 379
AluI	AGCT	2 cut(s)	36, 379
Alw26I	GTCTC	3 cut(s)	47, 252, 403
AlwI	GGATC	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	397
AsuNHI	GCTAGC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	384
BccI	CCATC	2 cut(s)	202, 347
BcoDI	GTCTC	3 cut(s)	47, 252, 403
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	374
BmsI	GCATC	2 cut(s)	58, 247
BmtI	GCTAGC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	2 cut(s)	216, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	372
BsiSI	CCGG	2 cut(s)	217, 299
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	47, 252, 403
BsmI	GAATGC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	47
Bsp13I	TCCGGA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	158, 295
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	2 cut(s)	390, 395
BspEI	TCCGGA	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	374
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	158, 295
BssT1I	CCWWGG	1 cut(s)	458
Bst4CI	ACNGT	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	34, 198, 377
BstDEI	CTNAG	2 cut(s)	37, 169
BstDSI	CCRYGG	1 cut(s)	458
BstKTI	GATC	2 cut(s)	161, 298
BstMAI	GTCTC	3 cut(s)	47, 252, 403
BstMBI	GATC	2 cut(s)	158, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 150
BstV1I	GCAGC	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	34, 198, 377
CciI	TCATGA	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	341, 459
CviJI	RGCY	5 cut(s)	5, 36, 92, 379, 451
CviKI_1	RGCY	5 cut(s)	5, 36, 92, 379, 451
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	37, 169
DpnI	GATC	2 cut(s)	160, 297
DpnII	GATC	2 cut(s)	158, 295
Eco130I	CCWWGG	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	2 cut(s)	344, 462
FatI	CATG	2 cut(s)	340, 458
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	398
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	398
HapII	CCGG	2 cut(s)	217, 299
Hin1II	CATG	2 cut(s)	344, 462
HinfI	GANTC	3 cut(s)	245, 383, 454
HpaII	CCGG	2 cut(s)	217, 299
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	4 cut(s)	242, 272, 299, 341
Hpy99I	CGWCG	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	71, 83, 190, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 150
HpyF3I	CTNAG	2 cut(s)	37, 169
Hsp92II	CATG	2 cut(s)	344, 462
Kpn2I	TCCGGA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	158, 295
LpnPI	CCDG	6 cut(s)	36, 111, 210, 230, 312, 389
Lsp1109I	GCAGC	1 cut(s)	384
LweI	GCATC	2 cut(s)	58, 247
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	160, 297
MboI	GATC	2 cut(s)	158, 295
MboII	GAAGA	1 cut(s)	362
MluCI	AATT	3 cut(s)	111, 132, 183
MlyI	GAGTC	2 cut(s)	254, 448
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	176, 295, 397
MroI	TCCGGA	1 cut(s)	298
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	217, 299
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	89, 150
NcoI	CCATGG	1 cut(s)	458
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	158, 295
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	2 cut(s)	344, 462
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	340
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	399
PleI	GAGTC	2 cut(s)	253, 448
PpsI	GAGTC	2 cut(s)	253, 448
PspN4I	GGNNCC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	1 cut(s)	398
Sau3AI	GATC	2 cut(s)	158, 295
SchI	GAGTC	2 cut(s)	254, 448
SetI	ASST	6 cut(s)	38, 43, 130, 320, 337, 381
SfaNI	GCATC	2 cut(s)	58, 247
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	111, 132, 183
SsiI	CCGC	2 cut(s)	390, 395
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	157, 174, 381
TasI	AATT	3 cut(s)	111, 132, 183
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	269, 329
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.