Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

11075651 .. 11077572

Gene Structure 1922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAATATGGAAGTTTCACCGTTGTCCTGTATGCGGTCGATGGTTACTTTCTATCTACCTTTTGTTCTTTCCAGGTTAAGAAAATGGACCTCGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGTCTCCTTGTCAAATTAAGGGAATACAAATCTGATCTTAACAATTTCAAGACGGAAGTGAAGAGAATCACATCTGGAAACTTAAACGCTACTGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGACACATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATTTAGGCCGAACCACAGACAGAATCAAGGACAGTAGGAGAACGATACTGGAGACAGAAGAGCTTGGTGTTTCAATCCTTCAGGATTTGCACGGGCAGAGACAGTCTCTCTTACGGGCCCATGAAACGCTTCATGGAGTCGATGATAACGTCGGAAAGAGCAAGAAAATATTGACAACAATGACTAGGAGAATGAATAGAAACAAATGGACCATCGGTGCGATAATCACAGTCCTTGTCCTCGCCATTATCTTTATCTTGTACTTCAAACTCACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

195

Amino Acids

22.19

Weight (kDa)

9.6

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 37	7.9e-10	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	74 - 139	6.4e-24	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	80 - 162	4.2e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	92
AciI	CCGC	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	252, 371
AdeI	CACNNNGTG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	175, 381, 574
AjnI	CCWGG	2 cut(s)	72, 581
AluBI	AGCT	3 cut(s)	242, 272, 370
AluI	AGCT	3 cut(s)	242, 272, 370
Alw26I	GTCTC	4 cut(s)	134, 353, 400, 417
Ama87I	CYCGRG	2 cut(s)	92, 222
AoxI	GGCC	2 cut(s)	313, 423
ApaI	GGGCCC	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	435
AspS9I	GGNCC	4 cut(s)	88, 423, 424, 516
AsuHPI	GGTGA	2 cut(s)	10, 571
AvaI	CYCGRG	2 cut(s)	92, 222
AvaII	GGWCC	2 cut(s)	88, 516
BaeGI	GKGCMC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	427
BccI	CCATC	2 cut(s)	35, 527
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	74, 583
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	4 cut(s)	134, 353, 400, 417
BfaI	CTAG	2 cut(s)	236, 492
Bme1390I	CCNGG	2 cut(s)	74, 583
Bme18I	GGWCC	2 cut(s)	88, 516
BmeT110I	CYCGRG	2 cut(s)	92, 222
BmgT120I	GGNCC	4 cut(s)	88, 423, 424, 516
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	74, 583
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BpmI	CTGGAG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	126, 360
BseBI	CCWGG	2 cut(s)	74, 583
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	2 cut(s)	126, 360
BseSI	GKGCMC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	315, 425
BsiEI	CGRYCG	1 cut(s)	39
BsiHKCI	CYCGRG	2 cut(s)	92, 222
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	4 cut(s)	134, 353, 400, 417
BsnI	GGCC	2 cut(s)	315, 425
BsoBI	CYCGRG	2 cut(s)	92, 222
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	3 cut(s)	160, 274, 281
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	315, 425
BspLI	GGNNCC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	126, 360
BssMI	GATC	3 cut(s)	160, 274, 281
Bst2UI	CCWGG	2 cut(s)	74, 583
Bst4CI	ACNGT	4 cut(s)	22, 341, 411, 538
Bst6I	CTCTTC	2 cut(s)	182, 360
BstKTI	GATC	3 cut(s)	163, 277, 284
BstMAI	GTCTC	4 cut(s)	134, 353, 400, 417
BstMBI	GATC	3 cut(s)	160, 274, 281
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	74, 583
BstSCI	CCNGG	2 cut(s)	72, 581
BstSLI	GKGCMC	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	315, 425
Cfr13I	GGNCC	4 cut(s)	88, 423, 424, 516
CsiI	ACCWGGT	1 cut(s)	581
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	428, 440
CviJI	RGCY	7 cut(s)	242, 251, 266, 272, 315, 370, 425
CviKI_1	RGCY	7 cut(s)	242, 251, 266, 272, 315, 370, 425
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	3 cut(s)	162, 276, 283
DpnII	GATC	3 cut(s)	160, 274, 281
DraIII	CACNNNGTG	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	182, 360
EarI	CTCTTC	2 cut(s)	182, 360
Eco24I	GRGCYC	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	88, 516
Eco57I	CTGAAG	2 cut(s)	252, 371
Eco88I	CYCGRG	2 cut(s)	92, 222
EcoRII	CCWGG	2 cut(s)	72, 581
EcoT38I	GRGCYC	1 cut(s)	427
FaeI	CATG	2 cut(s)	431, 443
FaiI	YATR	5 cut(s)	9, 33, 248, 429, 441
FatI	CATG	2 cut(s)	427, 439
FbaI	TGATCA	1 cut(s)	274
FriOI	GRGCYC	1 cut(s)	427
FspBI	CTAG	2 cut(s)	236, 492
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	315, 425
Hin1II	CATG	2 cut(s)	431, 443
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	192, 330, 444
HphI	GGTGA	2 cut(s)	10, 571
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	160, 461
Hpy188III	TCNNGA	5 cut(s)	175, 201, 224, 285, 389
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	116, 395
HpyCH4III	ACNGT	4 cut(s)	22, 341, 411, 538
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	431, 443
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	160, 274, 281
LguI	GCTCTTC	1 cut(s)	360
LpnPI	CCDG	9 cut(s)	41, 59, 86, 139, 186, 228, 341, 374, 568
MabI	ACCWGGT	1 cut(s)	581
MaeI	CTAG	2 cut(s)	236, 492
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	44, 231
MalI	GATC	3 cut(s)	162, 276, 283
MboI	GATC	3 cut(s)	160, 274, 281
MboII	GAAGA	2 cut(s)	199, 377
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	2 cut(s)	140, 169
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	88, 101, 557
MroXI	GAANNNNTTC	1 cut(s)	435
MseI	TTAA	5 cut(s)	78, 120, 143, 165, 209
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	74, 583
MvaI	CCWGG	2 cut(s)	74, 583
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	3 cut(s)	160, 274, 281
NlaIII	CATG	2 cut(s)	431, 443
NlaIV	GGNNCC	1 cut(s)	425
PaeR7I	CTCGAG	2 cut(s)	92, 222
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	192, 330
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	72, 581
PspGI	CCWGG	2 cut(s)	72, 581
PspN4I	GGNNCC	1 cut(s)	425
PspOMI	GGGCCC	1 cut(s)	423
PspPI	GGNCC	4 cut(s)	88, 423, 424, 516
PspXI	VCTCGAGB	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	5 cut(s)	78, 120, 143, 165, 209
Sau3AI	GATC	3 cut(s)	160, 274, 281
Sau96I	GGNCC	4 cut(s)	88, 423, 424, 516
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	2 cut(s)	74, 583
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	9 cut(s)	62, 78, 93, 108, 244, 274, 372, 459, 587
SexAI	ACCWGGT	1 cut(s)	581
Sfr274I	CTCGAG	2 cut(s)	92, 222
SinI	GGWCC	2 cut(s)	88, 516
SlaI	CTCGAG	2 cut(s)	92, 222
SmlI	CTYRAG	2 cut(s)	92, 222
SmoI	CTYRAG	2 cut(s)	92, 222
Sse9I	AATT	2 cut(s)	140, 169
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	2 cut(s)	236, 492
StyD4I	CCNGG	2 cut(s)	72, 581
TaaI	ACNGT	4 cut(s)	22, 341, 411, 538
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	4 cut(s)	39, 93, 223, 447
TasI	AATT	2 cut(s)	140, 169
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	2 cut(s)	192, 330
Tru1I	TTAA	5 cut(s)	78, 120, 143, 165, 209
Tru9I	TTAA	5 cut(s)	78, 120, 143, 165, 209
TspDTI	ATGAA	3 cut(s)	428, 444, 515
TspGWI	ACGGA	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	88, 516
XhoI	CTCGAG	2 cut(s)	92, 222
XmnI	GAANNNNTTC	1 cut(s)	435
XspI	CTAG	2 cut(s)	236, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.