Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8218632.1

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

296 .. 667

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8218632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atggtctgctgttatggaaatgcgcatattaggaagatggacctcgaggcaaggagtctgcagccgagtgtgaaggcaatgcttattgccaaggtgagagaatacaaaactgatttgaacaacttgaagagccaagttaagagaataacaacgccagagatcagtcattccgcccgcgaggagttgttggagtctcgagaaacagataccttgacggcctcgaatgatcaaagaggaaggttgttgatggcaacaggaaagaataaaccagtcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

92

Amino Acids

10.43

Weight (kDa)

9.3

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	24
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	171, 175
AgsI	TTSAA	2 cut(s)	118, 127
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	2 cut(s)	44, 195
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	2 cut(s)	44, 195
AvaII	GGWCC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	31, 241
BceAI	ACGGC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	2 cut(s)	44, 195
BmgT120I	GGNCC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	2 cut(s)	44, 195
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	2 cut(s)	44, 195
Bsp143I	GATC	2 cut(s)	159, 226
BspACI	CCGC	2 cut(s)	171, 175
BspANI	GGCC	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	63
BspQI	GCTCTTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	159, 226
BssT1I	CCWWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	162, 229
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	2 cut(s)	159, 226
BstSFI	CTRYAG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	40
CviJI	RGCY	3 cut(s)	64, 132, 218
CviKI_1	RGCY	3 cut(s)	64, 132, 218
DpnI	GATC	2 cut(s)	161, 228
DpnII	GATC	2 cut(s)	159, 226
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	40
Eco88I	CYCGRG	2 cut(s)	44, 195
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	2 cut(s)	15, 27
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	62
FspAI	RTGCGCAY	1 cut(s)	24
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	55, 191
HphI	GGTGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	195, 197
HpyAV	CCTTC	2 cut(s)	67, 231
HpyCH4V	TGCA	1 cut(s)	61
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	159, 226
LguI	GCTCTTC	1 cut(s)	122
LpnPI	CCDG	2 cut(s)	168, 240
Lsp1109I	GCAGC	1 cut(s)	73
MalI	GATC	2 cut(s)	161, 228
MboI	GATC	2 cut(s)	159, 226
MboII	GAAGA	2 cut(s)	46, 139
MlyI	GAGTC	2 cut(s)	64, 200
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	40, 53, 172, 227, 229
MseI	TTAA	1 cut(s)	138
MvnI	CGCG	1 cut(s)	177
NdeII	GATC	2 cut(s)	159, 226
NmeAIII	GCCGAG	1 cut(s)	90
NsbI	TGCGCA	1 cut(s)	24
PaeR7I	CTCGAG	2 cut(s)	44, 195
PciSI	GCTCTTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	63
PleI	GAGTC	2 cut(s)	63, 199
PpsI	GAGTC	2 cut(s)	63, 199
PspPI	GGNCC	1 cut(s)	40
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	62
Sau3AI	GATC	2 cut(s)	159, 226
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	64, 200
SetI	ASST	4 cut(s)	45, 96, 212, 242
SfcI	CTRYAG	1 cut(s)	59
Sfr274I	CTCGAG	2 cut(s)	44, 195
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	2 cut(s)	44, 195
SmlI	CTYRAG	2 cut(s)	44, 195
SmoI	CTYRAG	2 cut(s)	44, 195
SsiI	CCGC	2 cut(s)	171, 175
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	4 cut(s)	45, 196, 221, 273
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	40
XhoI	CTCGAG	2 cut(s)	44, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.