Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

6360055 .. 6362833

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTGAGGTATTCGAAGGATACGAGCGCCAATACAGCGAGCTCTCCGCCAATCTCACCAAGAAGTGTACAATAGCTGGTGGAATTCATGGAGAGCAAAAGAAGCAAAAGATTTCTGAAATAAAGGCTGGAATAGATGAAGCAGAATCTTTGATCCGGAAAATGGACCTTGAGGCAAGAAGTTTGCAGCCAAATGTTAAGGCTGTGCTTCTTGCTAAGTTGAGGGAATATAAATCAGATCTGAATAATCTGAAAAGCGAAGTTAAAAGACTTGTATCTGGCAACTTAAATGCATCTGCCCGGGATGAGTTGTTGGAATCAGGCATGGCTGATGCTTTGACGGCATCAGCAGATCAGAGATCAAGGTTGATGGCGACGACAGAGAGATTAGACAAGACCAGTGATAGAGTTAAGAACAGTAGAAGAACCATGCTGGAAACAGAAGAGCTTGGTGTTTCAATCCTTCAAGATTTGCATTCACAGCGACAGTCTCTCTTACATGCTCATAGCACGGTTCATGGAGTGGATGACAACATAGGTAAGAGCAAGAAAATTTTGACTTCCATGACAAGGAGGATGAGCAGGAACAAGTGGATAATTGGCTCAATTATTGCAGTTCTTGTCATTGCTATTGCCCTGATCTTGTACTTGAAACTTAAAATAGACAACAGATCTCCTCTTCTTCAGCTTGCCGGTGTTCTCAAATTGACAGATTTCTTCGTATTTTCTTGTTTCTCCCTACTTTTCGAGTGTGCAATGAGTTCTTGTAATGGAGATCCTCGAGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

263

Amino Acids

29.39

Weight (kDa)

9.2

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	4.2e-31	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 193	3.8e-24	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	148, 770
AcsI	RAATTY	2 cut(s)	84, 552
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	70, 647
AfiI	CCNNNNNNNGG	2 cut(s)	163, 570
AgsI	TTSAA	3 cut(s)	459, 467, 652
AluBI	AGCT	4 cut(s)	43, 77, 448, 688
AluI	AGCT	4 cut(s)	43, 77, 448, 688
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	148, 770
Ama87I	CYCGRG	2 cut(s)	300, 780
Aor13HI	TCCGGA	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	84, 552
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	2 cut(s)	301, 302
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	2 cut(s)	300, 780
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	14
BcnI	CCSGG	2 cut(s)	301, 302
BcoDI	GTCTC	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	14
BglII	AGATCT	2 cut(s)	238, 671
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	2 cut(s)	301, 302
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	300, 780
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	301, 302
BmsI	GCATC	3 cut(s)	302, 322, 353
Bpu14I	TTCGAA	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	301, 302
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 570
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	624, 762
BseAI	TCCGGA	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	310, 532, 582
BseLI	CCNNNNNNNGG	2 cut(s)	163, 570
BseMI	GCAATG	2 cut(s)	624, 762
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	300, 780
BsiSI	CCGG	3 cut(s)	157, 301, 693
BslI	CCNNNNNNNGG	2 cut(s)	163, 570
BsmAI	GTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	2 cut(s)	300, 780
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	68
Bsp143I	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
BspACI	CCGC	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	156
BspPI	GGATC	2 cut(s)	148, 770
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	15
BsrDI	GCAATG	2 cut(s)	624, 762
BsrFI	RCCGGY	1 cut(s)	692
BsrGI	TGTACA	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
Bst4CI	ACNGT	3 cut(s)	419, 489, 514
Bst6I	CTCTTC	2 cut(s)	438, 684
BstAUI	TGTACA	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	41, 690
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	310, 532, 582
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	7 cut(s)	156, 241, 355, 362, 642, 674, 778
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 103, 341, 481
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	299, 300
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	3 cut(s)	238, 671, 775
BstYI	RGATCY	3 cut(s)	238, 671, 775
BsuI	GTATCC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	310, 532, 582
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	41, 690
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	69, 646
CviAII	CATG	6 cut(s)	89, 325, 430, 500, 518, 565
CviJI	RGCY	9 cut(s)	43, 77, 128, 190, 203, 329, 448, 603, 688
CviKI_1	RGCY	9 cut(s)	43, 77, 128, 190, 203, 329, 448, 603, 688
CviQI	GTAC	2 cut(s)	69, 646
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	7 cut(s)	155, 240, 354, 361, 641, 673, 777
DpnII	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
Eam1104I	CTCTTC	2 cut(s)	438, 684
EarI	CTCTTC	2 cut(s)	438, 684
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	668
Eco88I	CYCGRG	2 cut(s)	300, 780
EcoICRI	GAGCTC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
FaiI	YATR	9 cut(s)	90, 231, 326, 431, 501, 507, 519, 536, 566
FatI	CATG	6 cut(s)	88, 324, 429, 499, 517, 564
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	3 cut(s)	317, 539, 589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	31
HapII	CCGG	3 cut(s)	157, 301, 693
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	146, 317
HpaII	CCGG	3 cut(s)	157, 301, 693
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	5 cut(s)	118, 238, 243, 252, 357
Hpy188III	TCNNGA	2 cut(s)	157, 467
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	11, 473
HpyCH4III	ACNGT	3 cut(s)	419, 489, 514
HpyCH4V	TGCA	5 cut(s)	187, 293, 475, 614, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 103, 341, 481
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	156
Kzo9I	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
LguI	GCTCTTC	1 cut(s)	438
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	302, 322, 353
MalI	GATC	7 cut(s)	155, 240, 354, 361, 641, 673, 777
MboI	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
MboII	GAAGA	5 cut(s)	435, 455, 671, 674, 709
MflI	RGATCY	3 cut(s)	238, 671, 775
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	84, 552, 597, 606, 704
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	166, 216, 567, 687, 789
Mph1103I	ATGCAT	1 cut(s)	295
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	6 cut(s)	198, 264, 287, 411, 657, 790
MspI	CCGG	3 cut(s)	157, 301, 693
MspR9I	CCNGG	2 cut(s)	301, 302
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	4 cut(s)	36, 103, 341, 481
NciI	CCSGG	2 cut(s)	301, 302
NdeII	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
NlaIII	CATG	6 cut(s)	92, 328, 433, 503, 521, 568
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	503
NspV	TTCGAA	1 cut(s)	15
PaeR7I	CTCGAG	1 cut(s)	780
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	146, 317
PkrI	GCNGC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	780
PsuI	RGATCY	3 cut(s)	238, 671, 775
RsaI	GTAC	2 cut(s)	70, 647
RsaNI	GTAC	2 cut(s)	69, 646
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	6 cut(s)	198, 264, 287, 411, 657, 790
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	7 cut(s)	153, 238, 352, 359, 639, 671, 775
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	301, 302
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	12, 45, 79, 171, 368, 450, 541, 690
SfaNI	GCATC	3 cut(s)	302, 322, 353
Sfr274I	CTCGAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	780
SmaI	CCCGGG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	170, 780
SmoI	CTYRAG	2 cut(s)	170, 780
Sse9I	AATT	5 cut(s)	84, 552, 597, 606, 704
SsiI	CCGC	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	299, 300
TaaI	ACNGT	3 cut(s)	419, 489, 514
TaqI	TCGA	3 cut(s)	15, 747, 781
TasI	AATT	5 cut(s)	84, 552, 597, 606, 704
TatI	WGTACW	2 cut(s)	68, 645
TfiI	GAWTC	2 cut(s)	146, 317
Tru1I	TTAA	6 cut(s)	198, 264, 287, 411, 657, 790
Tru9I	TTAA	6 cut(s)	198, 264, 287, 411, 657, 790
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	77, 153, 506
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	2 cut(s)	84, 552
XceI	RCATGY	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	780
XmaI	CCCGGG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.