Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

63977611 .. 63978042

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAGACGGGCCTCGAATGATCAAAGAGGACGGTTGTTGATGGCAACAGAAAGAATAAACCAGTCGAGTGACAGAATCAAGTCGAGTAGAAGAACAGTGCTCGAAACAGAGGAGCTTGGTATCACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATGCCGGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATAGTAGGAGTTCTCGTCCTTGCCATCCTGCTTATTCTATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

11.11

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	17 - 82	1.1e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	2 cut(s)	34, 305
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	61, 154
BseGI	GGATG	3 cut(s)	199, 249, 297
BseNI	ACTGG	2 cut(s)	61, 154
BseRI	GAGGAG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	19, 261
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	61, 154
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	2 cut(s)	19, 261
Bst4CI	ACNGT	3 cut(s)	33, 97, 212
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	199, 249, 297
BstKTI	GATC	2 cut(s)	22, 264
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	19, 261
BstNSI	RCATGY	2 cut(s)	170, 188
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	199, 249, 297
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	4 cut(s)	167, 185, 232, 265
CviJI	RGCY	3 cut(s)	11, 115, 230
CviKI_1	RGCY	3 cut(s)	11, 115, 230
DpnI	GATC	2 cut(s)	21, 263
DpnII	GATC	2 cut(s)	19, 261
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
FaeI	CATG	4 cut(s)	170, 188, 235, 268
FaiI	YATR	6 cut(s)	168, 186, 233, 266, 275, 313
FatI	CATG	4 cut(s)	166, 184, 231, 264
FbaI	TGATCA	1 cut(s)	19
FokI	GGATG	3 cut(s)	206, 256, 284
FspBI	CTAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	4 cut(s)	170, 188, 235, 268
HinfI	GANTC	2 cut(s)	75, 127
HpaII	CCGG	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	211, 234
HpyCH4III	ACNGT	3 cut(s)	33, 97, 212
HpyCH4V	TGCA	2 cut(s)	142, 184
Hsp92II	CATG	4 cut(s)	170, 188, 235, 268
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 261
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	74, 167, 184, 209, 314
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	68, 173
MalI	GATC	2 cut(s)	21, 263
MboI	GATC	2 cut(s)	19, 261
MboII	GAAGA	2 cut(s)	102, 152
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	3 cut(s)	20, 22, 103
MspI	CCGG	1 cut(s)	171
NdeII	GATC	2 cut(s)	19, 261
NlaIII	CATG	4 cut(s)	170, 188, 235, 268
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	170, 188
PaeI	GCATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	75, 127
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	19, 261
Sau96I	GGNCC	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	2 cut(s)	117, 222
SfaNI	GCATC	1 cut(s)	151
SphI	GCATGC	1 cut(s)	188
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	33, 97, 212
TaqI	TCGA	4 cut(s)	14, 65, 83, 102
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	75, 127
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	102
XceI	RCATGY	2 cut(s)	170, 188
XspI	CTAG	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.