Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

15986488 .. 15989945

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G198100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTGAGGTATTTGAGGGGTACGAGCGCCAATACTGCGAGCTCTCCGCCAATCTATCAAAGAAGTGCACGGCTGCTACCGCTGTTGATGGAGAGGGAAAAAAACAGAGAATTGCAGAGGTAAAGGCTGGATTAGATGATGCTGATACTTTGCTTAGGAAAATGGACCTCGAGGCAAGGAGTTTGCAGCCAAGTGTGAAGGCAGCGCTTCTTGCCAAGTTAAGAGAATATAAGACTGATTTCAACAATCTTAAAAGCCAAGTTAAGAGAATCACATCACCTGTTGCTAATCATGCAGCCCGGGACGAGTTGCTGGAGCCCGGAAGGGCAGAAACCTTGACGACATCGAACGATCAAAGAGGGAGATTATTGATGACAACTGAAAGATTAAATCAGTCGACGGACAGGGTCAAGGAGAGTAGAAGAACAATGCTAGAAACAGAAGAGCTTGGGGTCTCAATCCTCCAAGATTTACATCAACAACGCCAGTCTCTTCTACATGCCCATAATACAATCCATGGGGTGGATGGAAACATTAGCAAGAGCAAAAGGGTCCTGACAGAAATGACAAGCAGGATGAATAGGAACAAATGGATTGTTGGCTCCATAATCGGAGTCCTTGCCCTTGCCATCATGCTTATCCTTTATCTTAAGCTTACCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

222

Amino Acids

24.89

Weight (kDa)

9.46

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	398
AciI	CCGC	3 cut(s)	48, 81, 661
AfaI	GTAC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	3 cut(s)	43, 448, 655
AluI	AGCT	3 cut(s)	43, 448, 655
Alw21I	GWGCWC	2 cut(s)	45, 71
Alw26I	GTCTC	2 cut(s)	460, 495
Alw44I	GTGCAC	1 cut(s)	67
Ama87I	CYCGRG	2 cut(s)	170, 300
Aor51HI	AGCGCT	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	4 cut(s)	74, 187, 203, 296
AspLEI	GCGC	2 cut(s)	30, 208
AspS9I	GGNCC	2 cut(s)	166, 553
AsuC2I	CCSGG	3 cut(s)	301, 302, 321
AsuHPI	GGTGA	1 cut(s)	270
AvaI	CYCGRG	2 cut(s)	170, 300
AvaII	GGWCC	2 cut(s)	166, 553
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	45, 321
Bbv12I	GWGCWC	2 cut(s)	45, 71
BbvI	GCAGC	4 cut(s)	61, 199, 215, 308
BccI	CCATC	3 cut(s)	83, 521, 638
BceAI	ACGGC	1 cut(s)	87
BcnI	CCSGG	3 cut(s)	301, 302, 321
BcoDI	GTCTC	2 cut(s)	460, 495
BfaI	CTAG	2 cut(s)	434, 664
BfoI	RGCGCY	2 cut(s)	31, 209
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	4 cut(s)	75, 188, 204, 297
BlsI	GCNGC	4 cut(s)	76, 189, 205, 298
Bme1390I	CCNGG	3 cut(s)	301, 302, 321
Bme18I	GGWCC	2 cut(s)	166, 553
BmeT110I	CYCGRG	2 cut(s)	170, 300
BmgT120I	GGNCC	2 cut(s)	166, 553
BmiI	GGNNCC	3 cut(s)	318, 554, 604
BmrFI	CCNGG	3 cut(s)	301, 302, 321
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	3 cut(s)	301, 302, 321
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	300, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	487
Bse8I	GATNNNNATC	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	300, 517
BseGI	GGATG	2 cut(s)	532, 582
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	61, 199, 215, 308
BsiHKAI	GWGCWC	2 cut(s)	45, 71
BsiHKCI	CYCGRG	2 cut(s)	170, 300
BsiSI	CCGG	2 cut(s)	301, 321
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	460, 495
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	460
BsoBI	CYCGRG	2 cut(s)	170, 300
Bsp1286I	GDGCHC	3 cut(s)	45, 71, 321
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	3 cut(s)	48, 81, 661
BspLI	GGNNCC	3 cut(s)	318, 554, 604
BspQI	GCTCTTC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	300, 517
BssMI	GATC	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	517
Bst6I	CTCTTC	2 cut(s)	438, 498
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	532, 582
BstH2I	RGCGCY	2 cut(s)	31, 209
BstHHI	GCGC	2 cut(s)	30, 208
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	460, 495
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 80, 212, 293
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	299, 300, 319
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	61, 199, 215, 308
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	532, 582
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	30, 208
Cfr13I	GGNCC	2 cut(s)	166, 553
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	4 cut(s)	293, 500, 518, 634
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	438, 498
EarI	CTCTTC	2 cut(s)	438, 498
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	517
Eco24I	GRGCYC	2 cut(s)	45, 321
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	166, 553
Eco47III	AGCGCT	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	170, 300
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	45, 321
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	296, 503, 521, 637
FaiI	YATR	7 cut(s)	231, 294, 501, 507, 519, 608, 635
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	292, 499, 517, 633
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	4 cut(s)	75, 188, 204, 297
FokI	GGATG	2 cut(s)	539, 589
FriOI	GRGCYC	2 cut(s)	45, 321
Fsp4HI	GCNGC	4 cut(s)	75, 188, 204, 297
FspBI	CTAG	2 cut(s)	434, 664
GlaI	GCGC	2 cut(s)	29, 207
GluI	GCNGC	4 cut(s)	75, 188, 204, 297
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	2 cut(s)	31, 209
HapII	CCGG	2 cut(s)	301, 321
HhaI	GCGC	2 cut(s)	30, 208
Hin1II	CATG	4 cut(s)	296, 503, 521, 637
Hin6I	GCGC	2 cut(s)	28, 206
HinP1I	GCGC	2 cut(s)	28, 206
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	2 cut(s)	270, 615
HpaII	CCGG	2 cut(s)	301, 321
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	69, 399
Hpy188I	TCNGA	1 cut(s)	614
Hpy188III	TCNNGA	1 cut(s)	556
Hpy8I	GTNNAC	2 cut(s)	69, 399
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	193, 318
HpyCH4V	TGCA	4 cut(s)	69, 116, 187, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 80, 212, 293
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	296, 503, 521, 637
HspAI	GCGC	2 cut(s)	28, 206
Kzo9I	GATC	1 cut(s)	352
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	316, 608
LpnPI	CCDG	9 cut(s)	114, 294, 299, 314, 334, 391, 500, 559, 569
Lsp1109I	GCAGC	4 cut(s)	61, 199, 215, 308
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	434, 664
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	435, 455, 485
MhlI	GDGCHC	3 cut(s)	45, 71, 321
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	624
MnlI	CCTC	7 cut(s)	10, 88, 112, 166, 179, 353, 473
MseI	TTAA	5 cut(s)	221, 252, 264, 389, 651
MspA1I	CMGCKG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	2 cut(s)	301, 321
MspR9I	CCNGG	3 cut(s)	301, 302, 321
MwoI	GCNNNNNNNGC	4 cut(s)	36, 80, 212, 293
NciI	CCSGG	3 cut(s)	301, 302, 321
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	4 cut(s)	296, 503, 521, 637
NlaIV	GGNNCC	3 cut(s)	318, 554, 604
NspI	RCATGY	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	4 cut(s)	76, 189, 205, 298
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
PpuMI	RGGWCCY	1 cut(s)	553
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	553
PspN4I	GGNNCC	3 cut(s)	318, 554, 604
PspPI	GGNCC	2 cut(s)	166, 553
PspPPI	RGGWCCY	1 cut(s)	553
PspXI	VCTCGAGB	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	221, 252, 264, 389, 651
SatI	GCNGC	4 cut(s)	75, 188, 204, 297
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	166, 553
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	3 cut(s)	301, 302, 321
SduI	GDGCHC	3 cut(s)	45, 71, 321
SetI	ASST	8 cut(s)	12, 45, 123, 171, 283, 338, 450, 657
SfaNI	GCATC	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	166, 553
SlaI	CTCGAG	1 cut(s)	170
SmaI	CCCGGG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	170, 650
SmoI	CTYRAG	2 cut(s)	170, 650
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	3 cut(s)	48, 81, 661
SspMI	CTAG	2 cut(s)	434, 664
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	299, 300, 319
StyI	CCWWGG	1 cut(s)	517
TaqI	TCGA	3 cut(s)	171, 347, 398
TasI	AATT	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	5 cut(s)	221, 252, 264, 389, 651
Tru9I	TTAA	5 cut(s)	221, 252, 264, 389, 651
TseI	GCWGC	4 cut(s)	74, 187, 203, 296
TspDTI	ATGAA	1 cut(s)	593
TspGWI	ACGGA	1 cut(s)	416
TspMI	CCCGGG	1 cut(s)	300
Tth111I	GACNNNGTC	1 cut(s)	407
Van91I	CCANNNNNTGG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	650
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	166, 553
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	2 cut(s)	434, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.