Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

4151935 .. 4155125

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1053400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGCAGCGTATTTGAAGGGTACGAGCGCAACTACAGTGAGCTCTCCGCCAACCTCACCAAAAAGTGTACGGCAGCTGGTGCTCTCGATGGAGAACAAAAGAAGCAAAAGATTTCTGAAATAAAGGCTGGAATCGATGATGCAGAATCTTGGATCCGGAAAATGGACCTTGAGGCAAGAAGTTTGCCACCAAATATTAAGGCTGTGCTTCTTGCTAAGTTGAGGGAATATAAGTCGGATCTGAATAATCTGAAAAGCGAAGTTAAAAGACTTGTGTCTGGAAACGCATATGCAACTGCCCGAGATGAGTTGCTGGAATCAGGCATGGCTGATGCTCTGACAGCATCAGCTGATCAAAGATCAAGGCTAATGATGTCAACCGAGAGATTAAACAAGTCCAGTGGCAGAGTTAAGGACAGCAGAAGAACCATGCTGGAAACAGAAGAGCTTGGTGTTTCAATCCTCCAAGATCTGCATTCACAGAGACAATCTCTGTTACATGCTCATACCACGCTTCATGGAGTGGATGACAACATAGGGAAAAGCAAGAGAGTCCTGACTTCCATGGCGAGGAGGATGAACAGGAACAAGTGGCTTATTATTGCAGTTATCAGCGTTCTTGTCATTGTGATCGCTTTGGTCTTGTACTTCAAACTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

221

Amino Acids

24.65

Weight (kDa)

9.63

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	1.6e-31	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 193	3.8e-23	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	138 - 216	4.9e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	3 cut(s)	148, 161, 246
AfaI	GTAC	3 cut(s)	23, 70, 647
AfiI	CCNNNNNNNGG	2 cut(s)	163, 570
AgsI	TTSAA	3 cut(s)	17, 459, 652
AluBI	AGCT	4 cut(s)	43, 77, 350, 448
AluI	AGCT	4 cut(s)	43, 77, 350, 448
Alw21I	GWGCWC	2 cut(s)	45, 85
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	3 cut(s)	148, 161, 246
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	6, 74
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	45, 85
BbvI	GCAGC	2 cut(s)	18, 86
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	34
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	7, 75
BlsI	GCNGC	2 cut(s)	8, 76
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	155
BmsI	GCATC	3 cut(s)	130, 322, 353
BoxI	GACNNNNGTC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 570
Bse1I	ACTGG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	532, 582
BseLI	CCNNNNNNNGG	2 cut(s)	163, 570
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	2 cut(s)	18, 86
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	45, 85
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	163, 570
BsmAI	GTCTC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	45, 85
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	1 cut(s)	48
BspDI	ATCGAT	1 cut(s)	135
BspEI	TCCGGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	3 cut(s)	148, 161, 246
BspQI	GCTCTTC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	532, 582
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	6 cut(s)	156, 241, 355, 362, 472, 633
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 341
BstNSI	RCATGY	1 cut(s)	503
BstPAI	GACNNNNGTC	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	18, 86
BstX2I	RGATCY	3 cut(s)	153, 238, 469
BstYI	RGATCY	3 cut(s)	153, 238, 469
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	532, 582
BtsIMutI	CAGTG	2 cut(s)	43, 406
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	22, 69, 646
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	5 cut(s)	325, 430, 500, 518, 565
CviJI	RGCY	9 cut(s)	43, 77, 128, 203, 329, 350, 367, 448, 595
CviKI_1	RGCY	9 cut(s)	43, 77, 128, 203, 329, 350, 367, 448, 595
CviQI	GTAC	3 cut(s)	22, 69, 646
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	6 cut(s)	155, 240, 354, 361, 471, 632
DpnII	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	328, 433, 503, 521, 568
FatI	CATG	5 cut(s)	324, 429, 499, 517, 564
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	7, 75
FokI	GGATG	2 cut(s)	539, 589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	7, 75
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	7, 75
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	328, 433, 503, 521, 568
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	4 cut(s)	132, 146, 317, 552
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	69, 378
Hpy188I	TCNGA	5 cut(s)	118, 238, 243, 252, 339
Hpy188III	TCNNGA	4 cut(s)	86, 157, 279, 556
Hpy8I	GTNNAC	2 cut(s)	69, 378
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	143, 293, 475, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 341
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	328, 433, 503, 521, 568
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
LguI	GCTCTTC	1 cut(s)	438
Lsp1109I	GCAGC	2 cut(s)	18, 86
LweI	GCATC	3 cut(s)	130, 322, 353
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	6 cut(s)	155, 240, 354, 361, 471, 632
MboI	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
MboII	GAAGA	2 cut(s)	435, 455
MflI	RGATCY	3 cut(s)	153, 238, 469
MhlI	GDGCHC	2 cut(s)	45, 85
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	65, 166, 216, 473, 564, 567
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	5 cut(s)	198, 264, 389, 411, 657
MspA1I	CMGCKG	2 cut(s)	77, 350
MspI	CCGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	80, 341
NcoI	CCATGG	1 cut(s)	564
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
NlaIII	CATG	5 cut(s)	328, 433, 503, 521, 568
NlaIV	GGNNCC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	503
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	3 cut(s)	132, 146, 317
PkrI	GCNGC	2 cut(s)	8, 76
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PshAI	GACNNNNGTC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	3 cut(s)	153, 238, 469
PvuII	CAGCTG	2 cut(s)	77, 350
RsaI	GTAC	3 cut(s)	23, 70, 647
RsaNI	GTAC	3 cut(s)	22, 69, 646
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	198, 264, 389, 411, 657
SatI	GCNGC	2 cut(s)	7, 75
Sau3AI	GATC	6 cut(s)	153, 238, 352, 359, 469, 630
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	561
SduI	GDGCHC	2 cut(s)	45, 85
SetI	ASST	6 cut(s)	45, 57, 79, 171, 352, 450
SfaNI	GCATC	3 cut(s)	130, 322, 353
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	196
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	87, 135
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	3 cut(s)	132, 146, 317
Tru1I	TTAA	5 cut(s)	198, 264, 389, 411, 657
Tru9I	TTAA	5 cut(s)	198, 264, 389, 411, 657
TscAI	CASTG	2 cut(s)	43, 406
TseI	GCWGC	2 cut(s)	6, 74
TspDTI	ATGAA	2 cut(s)	506, 593
TspRI	CASTG	2 cut(s)	43, 406
VpaK11BI	GGWCC	1 cut(s)	166
XceI	RCATGY	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.