Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

63898088 .. 63900171

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATTTATGGGTGTTTACCGAAATTCTGCTTCTTCAAATGTGGAGACCGGGGACTCCGGTATTGCTTTGGTTGCTTCAGAGCCACCGCAAATTTGAATATGGAGGAGGAGGAGGAGCTGGCTTGGGAAGAGAGTTTCGAGAGGTTGAGATGGTTTCGAGAGGCCGAGATGGAGGGGAAAGAGCAAAGGAAGCAGAGAAATGCCGAGATAAAAGCTGCATTGGATGAAGCTGATGATTTGATTAGGAAGATGGACCTAGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGACGACGCTTCTTCCCAAGGTGAGAGAATACAAAACCGATTTGAACAACTTGAAGAGCCAAGTTAAGAGAATAACAACACCAGAGATCAGTCATTTAGCCCGCGAGGAGTTGTTGGGGTCTGGAGAAGCAGATACCTTGACGGCCTCGAATGATCAAAGAGGAAGGTTGTTGATGACAACAGAAAGAATAAACCAGTCAAGTGACAGAATCAAGGCGAGTAGAAGAACAGTGCTGGAAACAGAGGAGCTTGGTGTTACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATGCCAGTAACAATGTATGTTTTCTGCCTTCTCCCTTTCGTATGTTGCATGCGGTGGATGAAACTATTATCAACAGTAAGAAGGTTTTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATAGTTGGAGTTCTCGTCCTTGCCATCCTGCTTATTCTATACTTGAAGATATCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

260

Amino Acids

30.02

Weight (kDa)

8.71

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	58 - 120	4e-17	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	157 - 232	4.2e-12	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AciI	CCGC	3 cut(s)	87, 388, 638
AclWI	GGATC	1 cut(s)	719
AcsI	RAATTY	2 cut(s)	23, 91
AcuI	CTGAAG	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	37, 97, 331, 340, 769
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	4 cut(s)	118, 215, 230, 535
AluI	AGCT	4 cut(s)	118, 215, 230, 535
Alw26I	GTCTC	2 cut(s)	39, 582
AlwI	GGATC	1 cut(s)	719
AoxI	GGCC	2 cut(s)	162, 429
ApeKI	GCWGC	2 cut(s)	215, 274
ApoI	RAATTY	2 cut(s)	23, 91
AspS9I	GGNCC	1 cut(s)	253
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	202, 286
BccI	CCATC	4 cut(s)	144, 163, 244, 755
BceAI	ACGGC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	39, 582
BfaI	CTAG	2 cut(s)	257, 781
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	2 cut(s)	216, 275
BlsI	GCNGC	2 cut(s)	217, 276
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	49, 303
BsaWI	WCCGGW	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bse1I	ACTGG	3 cut(s)	481, 574, 591
BseDI	CCNNGG	2 cut(s)	49, 303
BseGI	GGATG	4 cut(s)	229, 649, 699, 747
BseNI	ACTGG	3 cut(s)	481, 574, 591
BseRI	GAGGAG	6 cut(s)	119, 122, 125, 128, 407, 545
BseXI	GCAGC	2 cut(s)	202, 286
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	164, 431
BsiSI	CCGG	2 cut(s)	49, 58
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	39, 582
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	164, 431
Bso31I	GGTCTC	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	372, 439, 711
BspACI	CCGC	3 cut(s)	87, 388, 638
BspANI	GGCC	2 cut(s)	164, 431
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	721
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	1 cut(s)	719
BspQI	GCTCTTC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	481, 574, 591
BssECI	CCNNGG	2 cut(s)	49, 303
BssMI	GATC	3 cut(s)	372, 439, 711
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	517, 662
Bst6I	CTCTTC	3 cut(s)	123, 335, 585
BstC8I	GCNNGC	3 cut(s)	120, 388, 636
BstF5I	GGATG	4 cut(s)	229, 649, 699, 747
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	375, 442, 714
BstMAI	GTCTC	2 cut(s)	39, 582
BstMBI	GATC	3 cut(s)	372, 439, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 190
BstNSI	RCATGY	2 cut(s)	590, 638
BstSCI	CCNGG	1 cut(s)	48
BstSFI	CTRYAG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	202, 286
BstV2I	GAAGAC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	164, 431
BtsCI	GGATG	4 cut(s)	229, 649, 699, 747
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	3 cut(s)	120, 388, 636
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	1 cut(s)	301
CviAII	CATG	4 cut(s)	587, 635, 682, 715
DpnI	GATC	3 cut(s)	374, 441, 713
DpnII	GATC	3 cut(s)	372, 439, 711
Eam1104I	CTCTTC	3 cut(s)	123, 335, 585
EarI	CTCTTC	3 cut(s)	123, 335, 585
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	39
Eco32I	GATATC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	590, 638, 685, 718
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	4 cut(s)	586, 634, 681, 714
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	216, 275
FokI	GGATG	4 cut(s)	236, 656, 706, 734
Fsp4HI	GCNGC	2 cut(s)	216, 275
FspBI	CTAG	2 cut(s)	257, 781
GluI	GCNGC	2 cut(s)	216, 275
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	164, 431
HapII	CCGG	2 cut(s)	49, 58
HgaI	GACGC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	590, 638, 685, 718
HinfI	GANTC	4 cut(s)	54, 268, 495, 547
HpaII	CCGG	2 cut(s)	49, 58
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	139, 158, 408
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	444, 624, 661, 684
HpyCH4III	ACNGT	2 cut(s)	517, 662
HpyCH4V	TGCA	4 cut(s)	218, 274, 562, 634
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 190
Hsp92II	CATG	4 cut(s)	590, 638, 685, 718
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	372, 439, 711
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	2 cut(s)	115, 532
Lsp1109I	GCAGC	2 cut(s)	202, 286
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	257, 781
MaeIII	GTNAC	3 cut(s)	488, 541, 593
MalI	GATC	3 cut(s)	374, 441, 713
MboI	GATC	3 cut(s)	372, 439, 711
MboII	GAAGA	9 cut(s)	25, 140, 259, 290, 298, 352, 522, 572, 781
MluCI	AATT	2 cut(s)	23, 91
MlyI	GAGTC	2 cut(s)	48, 277
MmeI	TCCRAC	1 cut(s)	709
MseI	TTAA	1 cut(s)	351
MspI	CCGG	2 cut(s)	49, 58
MspR9I	CCNGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	72, 190
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	372, 439, 711
NlaIII	CATG	4 cut(s)	590, 638, 685, 718
NlaIV	GGNNCC	1 cut(s)	721
NmeAIII	GCCGAG	3 cut(s)	190, 229, 303
NmuCI	GTSAC	1 cut(s)	488
NspI	RCATGY	2 cut(s)	590, 638
PaeI	GCATGC	1 cut(s)	638
PciSI	GCTCTTC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	495, 547
PkrI	GCNGC	2 cut(s)	217, 276
PleI	GAGTC	2 cut(s)	48, 276
PpsI	GAGTC	2 cut(s)	48, 276
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	216, 275
Sau3AI	GATC	3 cut(s)	372, 439, 711
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	48, 277
ScrFI	CCNGG	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	253
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	2 cut(s)	23, 91
SsiI	CCGC	3 cut(s)	87, 388, 638
SspMI	CTAG	2 cut(s)	257, 781
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	517, 662
TaqI	TCGA	3 cut(s)	138, 157, 434
TasI	AATT	2 cut(s)	23, 91
TfiI	GAWTC	2 cut(s)	495, 547
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	2 cut(s)	215, 274
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	240, 660
TspRI	CASTG	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	23, 91
XceI	RCATGY	2 cut(s)	590, 638
XspI	CTAG	2 cut(s)	257, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.