Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003511.1

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

197918 .. 198253

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003511.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggaccgcgaggcaaggagtctgcagccgagtgtgaaggcaatgcttattgccaaggtgagagaatacaaaactgatttgaacaacttgaagagccaagttaagagaataacaacgccagagatcagtcattccgcccgcgaggagttgttggagtctcgagaaacagataccttgacggcctcgaatgatcaaagaggaaggttgttgatggcaacaggaaagaataaaccagtcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

80

Amino Acids

9.1

Weight (kDa)

9.52

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	9, 141
AciI	CCGC	3 cut(s)	7, 135, 139
AgsI	TTSAA	2 cut(s)	82, 91
Alw26I	GTCTC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	37
Bsh1236I	CGCG	2 cut(s)	9, 141
BshFI	GGCC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	123, 190
BspACI	CCGC	3 cut(s)	7, 135, 139
BspANI	GGCC	1 cut(s)	182
BspFNI	CGCG	2 cut(s)	9, 141
BspMAI	CTGCAG	1 cut(s)	27
BspQI	GCTCTTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	123, 190
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	9, 141
BstKTI	GATC	2 cut(s)	126, 193
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	2 cut(s)	123, 190
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	2 cut(s)	9, 141
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	3 cut(s)	28, 96, 182
CviKI_1	RGCY	3 cut(s)	28, 96, 182
DpnI	GATC	2 cut(s)	125, 192
DpnII	GATC	2 cut(s)	123, 190
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FauI	CCCGC	1 cut(s)	146
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	182
HinfI	GANTC	2 cut(s)	19, 155
HphI	GGTGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	159, 161
HpyAV	CCTTC	2 cut(s)	31, 195
HpyCH4V	TGCA	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	123, 190
LguI	GCTCTTC	1 cut(s)	86
LpnPI	CCDG	2 cut(s)	132, 204
Lsp1109I	GCAGC	1 cut(s)	37
MalI	GATC	2 cut(s)	125, 192
MboI	GATC	2 cut(s)	123, 190
MboII	GAAGA	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	28, 164
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	4 cut(s)	4, 136, 191, 193
MseI	TTAA	1 cut(s)	102
MvnI	CGCG	2 cut(s)	9, 141
NdeII	GATC	2 cut(s)	123, 190
NmeAIII	GCCGAG	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	2 cut(s)	27, 163
PpsI	GAGTC	2 cut(s)	27, 163
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	123, 190
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	28, 164
SetI	ASST	3 cut(s)	60, 176, 206
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
SsiI	CCGC	3 cut(s)	7, 135, 139
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	3 cut(s)	160, 185, 237
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.