Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

63976921 .. 63977550

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGTGATGTATTTGAAAGGTACGAGCGCCATTACTGCGATCTCTCCGCCAATCTCTCAAACAAATGCACCACCACCACCACCACCTCTCTGAATTTCTATTTCATTTTTCTGGGTTTGGCACGTCGCATCATGCATTTCGAGCAAAGGAAGCAGAGAACTGCAGAGACAGAAGTTGCATTGTATGAAGCTGATGATTTGATTAGGAAGATGGACCTCGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGGCAATGCTTATTGCCAAGGTGAGAGAATACAAAACTGATTTGAACAACTTGAAGAGCCAAGTTAAGAGAATAACAACGCCAGAGATCAGTCATTCCGCCCGCGAGGAGTTGTTGGAGTCTCGAGAAACAGATACCTTGACGGTACGTATTACCTTTCTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

137

Amino Acids

16.05

Weight (kDa)

7.79

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	46 - 107	5.4e-16	Vesicle transport v-SNARE protein N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	218
AccII	CGCG	1 cut(s)	351
AciI	CCGC	3 cut(s)	48, 345, 349
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	2 cut(s)	23, 393
AgsI	TTSAA	3 cut(s)	17, 292, 301
AjiI	CACGTC	1 cut(s)	125
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw26I	GTCTC	2 cut(s)	161, 372
Ama87I	CYCGRG	2 cut(s)	218, 369
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	94
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	218, 369
AvaII	GGWCC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	161, 372
BfmI	CTRYAG	2 cut(s)	162, 233
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	2 cut(s)	218, 369
BmgBI	CACGTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	351
BsiHKCI	CYCGRG	2 cut(s)	218, 369
BsmAI	GTCTC	2 cut(s)	161, 372
BsoBI	CYCGRG	2 cut(s)	218, 369
Bsp143I	GATC	2 cut(s)	40, 333
BspACI	CCGC	3 cut(s)	48, 345, 349
BspFNI	CGCG	1 cut(s)	351
BspMAI	CTGCAG	2 cut(s)	166, 237
BspQI	GCTCTTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	40, 333
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	43, 336
BstMAI	GTCTC	2 cut(s)	161, 372
BstMBI	GATC	2 cut(s)	40, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 142, 151
BstSFI	CTRYAG	2 cut(s)	162, 233
BstSNI	TACGTA	1 cut(s)	395
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	247
BtrI	CACGTC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	22, 392
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	3 cut(s)	191, 238, 306
CviKI_1	RGCY	3 cut(s)	191, 238, 306
CviQI	GTAC	2 cut(s)	22, 392
DpnI	GATC	2 cut(s)	42, 335
DpnII	GATC	2 cut(s)	40, 333
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
EciI	GGCGGA	2 cut(s)	37, 334
Eco105I	TACGTA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	214
Eco88I	CYCGRG	2 cut(s)	218, 369
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	134, 186
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	31
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	229, 365
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	369, 371
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	124, 394
HpyCH4V	TGCA	5 cut(s)	69, 136, 164, 179, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 142, 151
HpySE526I	ACGT	2 cut(s)	124, 394
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	40, 333
LguI	GCTCTTC	1 cut(s)	296
LpnPI	CCDG	2 cut(s)	98, 342
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	2 cut(s)	124, 394
MalI	GATC	2 cut(s)	42, 335
MboI	GATC	2 cut(s)	40, 333
MboII	GAAGA	2 cut(s)	220, 313
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	2 cut(s)	238, 374
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	97, 214, 227, 346
Mph1103I	ATGCAT	1 cut(s)	138
MseI	TTAA	1 cut(s)	312
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	36, 142, 151
NdeII	GATC	2 cut(s)	40, 333
NlaIII	CATG	1 cut(s)	136
NmeAIII	GCCGAG	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	138
PaeR7I	CTCGAG	2 cut(s)	218, 369
PciSI	GCTCTTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	237, 373
PpsI	GAGTC	2 cut(s)	237, 373
Ppu21I	YACGTR	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	218
PstI	CTGCAG	2 cut(s)	166, 237
RsaI	GTAC	2 cut(s)	23, 393
RsaNI	GTAC	2 cut(s)	22, 392
SapI	GCTCTTC	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	40, 333
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	2 cut(s)	238, 374
SetI	ASST	9 cut(s)	23, 89, 127, 193, 219, 270, 386, 397, 404
SfaNI	GCATC	1 cut(s)	138
SfcI	CTRYAG	2 cut(s)	162, 233
Sfr274I	CTCGAG	2 cut(s)	218, 369
SinI	GGWCC	1 cut(s)	214
SlaI	CTCGAG	2 cut(s)	218, 369
SmlI	CTYRAG	2 cut(s)	218, 369
SmoI	CTYRAG	2 cut(s)	218, 369
SnaBI	TACGTA	1 cut(s)	395
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	3 cut(s)	48, 345, 349
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	127, 397
TaqI	TCGA	3 cut(s)	141, 219, 370
TasI	AATT	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	94, 201
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	94
XhoI	CTCGAG	2 cut(s)	218, 369
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.