Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

3412170 .. 3413367

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTTCTGTTGCTCATATATTGTTGGTGGAATTACGATCCGGAACGATGAGTGATGTATTTGAAAGGTACGAGCGCCATTACTGCGATCTCTCCGCTAATCTCTCAAACAAATGCACCACCACCACCATCGTTGATGGAGATACACAGCAAAGGAAGCAGAGAACTGCAGAGACAGAAGTTGCATTGAATGAAGCTGATGATTTGATGGACCTCGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGGCAATGCTTATTGCCAAGGAAAGAATAAACCAGTCGAGTGACAGAATCAAGTCGAGTAGAAGAACAGTGCTCGAAACAGAGGAGCTTGGTATCACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATGCCAGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATAGTAGGAGTTCTCGTCCTTGCCATCCTGCTTATTCTACACTTGAAGATACCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

182

Amino Acids

20.6

Weight (kDa)

7.86

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	17 - 90	2.1e-13	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	89 - 154	6.8e-18	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	2 cut(s)	96, 404
AclWI	GGATC	2 cut(s)	33, 485
AfaI	GTAC	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	65, 190, 535
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	2 cut(s)	197, 331
AluI	AGCT	2 cut(s)	197, 331
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	2 cut(s)	167, 378
AlwI	GGATC	2 cut(s)	33, 485
Ama87I	CYCGRG	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	131, 137, 202, 521
BcoDI	GTCTC	2 cut(s)	167, 378
BfaI	CTAG	1 cut(s)	547
BfmI	CTRYAG	2 cut(s)	168, 230
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	1 cut(s)	233
BlsI	GCNGC	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	487
BmsI	GCATC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	489, 519
Bse1I	ACTGG	3 cut(s)	277, 370, 387
Bse3DI	GCAATG	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	415, 465, 513
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	3 cut(s)	277, 370, 387
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	167, 378
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	38, 88, 477
BspACI	CCGC	2 cut(s)	96, 404
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	2 cut(s)	172, 234
BspPI	GGATC	2 cut(s)	33, 485
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	277, 370, 387
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	38, 88, 477
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	313, 428
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	415, 465, 513
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	3 cut(s)	41, 91, 480
BstMAI	GTCTC	2 cut(s)	167, 378
BstMBI	GATC	3 cut(s)	38, 88, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 157
BstNSI	RCATGY	2 cut(s)	386, 404
BstSFI	CTRYAG	2 cut(s)	168, 230
BstV1I	GCAGC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	415, 465, 513
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	4 cut(s)	383, 401, 448, 481
CviJI	RGCY	4 cut(s)	197, 235, 331, 446
CviKI_1	RGCY	4 cut(s)	197, 235, 331, 446
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	3 cut(s)	40, 90, 479
DpnII	GATC	3 cut(s)	38, 88, 477
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	386, 404, 451, 484
FaiI	YATR	7 cut(s)	18, 20, 384, 402, 449, 482, 491
FatI	CATG	4 cut(s)	382, 400, 447, 480
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	3 cut(s)	422, 472, 500
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	547
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	79
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	386, 404, 451, 484
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	226, 291, 343
HpaII	CCGG	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	42, 340
HpyAV	CCTTC	3 cut(s)	238, 427, 450
HpyCH4III	ACNGT	2 cut(s)	313, 428
HpyCH4V	TGCA	6 cut(s)	117, 170, 185, 232, 358, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 157
Hsp92II	CATG	4 cut(s)	386, 404, 451, 484
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	38, 88, 477
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	55, 290, 383, 400, 425, 530
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	547
MaeIII	GTNAC	2 cut(s)	284, 389
MalI	GATC	3 cut(s)	40, 90, 479
MboI	GATC	3 cut(s)	38, 88, 477
MboII	GAAGA	3 cut(s)	318, 368, 547
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	32, 394
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	211, 224, 319
MroI	TCCGGA	1 cut(s)	41
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	84, 157
NdeII	GATC	3 cut(s)	38, 88, 477
NlaIII	CATG	4 cut(s)	386, 404, 451, 484
NlaIV	GGNNCC	1 cut(s)	487
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	2 cut(s)	386, 404
PaeI	GCATGC	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	291, 343
PkrI	GCNGC	1 cut(s)	234
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	211
PspXI	VCTCGAGB	1 cut(s)	215
PstI	CTGCAG	2 cut(s)	172, 234
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	38, 88, 477
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	5 cut(s)	71, 199, 216, 333, 438
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	2 cut(s)	168, 230
Sfr274I	CTCGAG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	211
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SphI	GCATGC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	32, 394
SsiI	CCGC	2 cut(s)	96, 404
SspMI	CTAG	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	313, 428
TaqI	TCGA	4 cut(s)	216, 281, 299, 318
TasI	AATT	2 cut(s)	32, 394
TfiI	GAWTC	2 cut(s)	291, 343
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	207, 426
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	2 cut(s)	386, 404
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.