Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

24834496 .. 24837597

Gene Structure 3102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G263300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTGACGTATTTGAAGGGTACGAGCGCCAATACAGTGAGCTCTCTGCCAACCTCACCAAAAAGTGTACGGTAGCTGGTGCTCTTGATGGAGAGCAAAAGAAGCAAAAGATTTCTGAAATAAAGGCTGCAATTGATGATGCAGAATCTTTGATCCGGAAAATGGACCTCGAGGCAAGAAGTTTGCCACCAAATATTAAAGCTGTGCTTCTTGCTAAGTTGAGGGAATATAAATCAGATCTGAATAATCTGAAAAGCGAAGTTAAAAGACTTGTATCTGGTAACTCATATTCATCTGCCCGAGATGAGTTGTTGGAATCAGGCATGGCTGATACTCTGACGGCATCAGCTGATCAAAGAGGAAGGCTAATGATGTCAACAGAGAGATTAAACAAGTCTAGTGATAGAGTTAAGGACAGTAGAAGAACCATGCTGGAAACAGAAGAGCTTGGTGTTTCAATCCTTCAAGATCTGCATTCACAGAGACAGTCTCTGTTACATGCAAATAACACGCTTCATGGGGTGGATGACAACATAGGGAAAAGCAAGAGAGTTTTGACTTCCATGGCACGGAGGATGAGCAGGAACAAGTGGATTATTGGCAGTGTTATTGCCGTTCTTGTCATTGCCATCGCCTTGATCTTGTACTTCAAACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

221

Amino Acids

24.63

Weight (kDa)

9.44

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	156
AclWI	GGATC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	23, 70, 647
AfiI	CCNNNNNNNGG	2 cut(s)	163, 570
AgsI	TTSAA	4 cut(s)	17, 459, 467, 652
AluBI	AGCT	5 cut(s)	43, 77, 203, 350, 448
AluI	AGCT	5 cut(s)	43, 77, 203, 350, 448
Alw21I	GWGCWC	2 cut(s)	45, 85
Alw26I	GTCTC	2 cut(s)	478, 495
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	493
Ama87I	CYCGRG	2 cut(s)	170, 300
Aor13HI	TCCGGA	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	2 cut(s)	170, 300
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	2 cut(s)	45, 85
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	83, 638
BceAI	ACGGC	2 cut(s)	357, 599
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	478, 495
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	31
BglII	AGATCT	2 cut(s)	238, 469
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	170, 300
BmgT120I	GGNCC	1 cut(s)	166
BmsI	GCATC	2 cut(s)	130, 353
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 570
Bse3DI	GCAATG	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	532, 582
BseLI	CCNNNNNNNGG	2 cut(s)	163, 570
BseMI	GCAATG	1 cut(s)	624
BseXI	GCAGC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	45, 85
BsiHKCI	CYCGRG	2 cut(s)	170, 300
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	2 cut(s)	163, 570
BsmAI	GTCTC	2 cut(s)	478, 495
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	2 cut(s)	170, 300
Bsp1286I	GDGCHC	2 cut(s)	45, 85
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	153, 238, 352, 469, 639
Bsp19I	CCATGG	1 cut(s)	564
BspEI	TCCGGA	1 cut(s)	156
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	5 cut(s)	153, 238, 352, 469, 639
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	4 cut(s)	38, 73, 419, 489
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	564
BstF5I	GGATG	2 cut(s)	532, 582
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	5 cut(s)	156, 241, 355, 472, 642
BstMAI	GTCTC	2 cut(s)	478, 495
BstMBI	GATC	5 cut(s)	153, 238, 352, 469, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	115
BstX2I	RGATCY	2 cut(s)	238, 469
BstYI	RGATCY	2 cut(s)	238, 469
BtgI	CCRYGG	1 cut(s)	564
BtgZI	GCGATG	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	532, 582
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	43, 610
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	22, 69, 646
CviAII	CATG	5 cut(s)	325, 430, 500, 518, 565
CviJI	RGCY	8 cut(s)	43, 77, 128, 203, 329, 350, 367, 448
CviKI_1	RGCY	8 cut(s)	43, 77, 128, 203, 329, 350, 367, 448
CviQI	GTAC	3 cut(s)	22, 69, 646
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	5 cut(s)	155, 240, 354, 471, 641
DpnII	GATC	5 cut(s)	153, 238, 352, 469, 639
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	2 cut(s)	170, 300
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	5 cut(s)	328, 433, 503, 521, 568
FaiI	YATR	8 cut(s)	231, 289, 326, 431, 501, 519, 536, 566
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	5 cut(s)	324, 429, 499, 517, 564
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	539, 589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	31
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	328, 433, 503, 521, 568
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	146, 317
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	69, 378
Hpy188I	TCNGA	5 cut(s)	118, 238, 243, 252, 339
Hpy188III	TCNNGA	3 cut(s)	86, 157, 467
Hpy8I	GTNNAC	2 cut(s)	69, 378
HpyAV	CCTTC	3 cut(s)	11, 357, 473
HpyCH4III	ACNGT	4 cut(s)	38, 73, 419, 489
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	131, 143, 475, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	328, 433, 503, 521, 568
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	5 cut(s)	153, 238, 352, 469, 639
LguI	GCTCTTC	1 cut(s)	438
LpnPI	CCDG	6 cut(s)	63, 170, 264, 306, 419, 568
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	130, 353
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	5, 281, 495
MalI	GATC	5 cut(s)	155, 240, 354, 471, 641
MboI	GATC	5 cut(s)	153, 238, 352, 469, 639
MboII	GAAGA	2 cut(s)	435, 455
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	2 cut(s)	238, 469
MhlI	GDGCHC	2 cut(s)	45, 85
MluCI	AATT	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	65, 166, 179, 216, 353, 567
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	5 cut(s)	198, 264, 389, 411, 657
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	5 cut(s)	153, 238, 352, 469, 639
NlaIII	CATG	5 cut(s)	328, 433, 503, 521, 568
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	146, 317
PkrI	GCNGC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	238, 469
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	23, 70, 647
RsaNI	GTAC	3 cut(s)	22, 69, 646
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	198, 264, 389, 411, 657
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	5 cut(s)	153, 238, 352, 469, 639
Sau96I	GGNCC	1 cut(s)	166
SduI	GDGCHC	2 cut(s)	45, 85
SetI	ASST	8 cut(s)	12, 45, 57, 79, 171, 205, 352, 450
SfaNI	GCATC	2 cut(s)	130, 353
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	132
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	4 cut(s)	38, 73, 419, 489
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	132
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	146, 317
Tru1I	TTAA	5 cut(s)	198, 264, 389, 411, 657
Tru9I	TTAA	5 cut(s)	198, 264, 389, 411, 657
TscAI	CASTG	2 cut(s)	43, 610
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	282, 506
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	43, 610
VpaK11BI	GGWCC	1 cut(s)	166
XceI	RCATGY	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.