Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

3684841 .. 3695612

Gene Structure 10772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1055700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGCGACGTATTCGAAGGGTACGAGCGCCACTACAGTGAGCTCTCCGCCAACCTCACCAAAAAGTGTACGATAGCTGGGGCTCTCGATGGAGAACAAAAGAAGCAGAAGGTTACTGAAATAAAGGCTGGAATCGATGATGCAGAATCTTTGATCCGGAAAATGGACCTTGAGGCAAGAAGTTTGCCACCAAATATTAAGGCTGTGCTTCTTGCTAAGCTGAGGGAATATAAGTCGGATCTGAATAATCTGAAAAGCGAAGTTAAAAAACTTGTATCTGGAAACGCATATGCATCTGCCCGAGATGAGTTGCTGGAATCAGGCATGGCTGATTCTCTGACAGCATCAGCTGATCAGAGGTCAAGGCTAATGATGTCAACCGAGAGAATAAACAAGTCCAGTGATAGAGTTAAGGACAGCAGAAGAACCATGCTCGAAACAGAAGAGCTTGGTGTTTCGATCCTCCAGGATCTGCATTCACAGAGACAATCACTGTTGCATGCTCATACCACGCTTCATGGAGTGGATGACAACATAGGGAAAAGCAAGAGAGTTCTGACTTCCATGGCAAGGAGTATGAACAGGAACAAGCTTTATATTCATTTTATGGTTGTTTTAACAATCTTTCCTCAAACAAGTTTATATTCCATCTCTCGTCCTCTTATGTTTAGTGTCAGTATGCATGCCTTCTCTTCCTTGAGTAATCTTCATGGAGTGGATGACAACGTAGGGGAAAGCAAGAGAGTTCTGACTTCCATGGCAAGGAGTATGAACAGGAACAAGTGGCTTATTGGCACGGTTATCGCGGTTCTTGTCATTGTGATCGCCTTGATCTTGTACTTCAAACTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

285

Amino Acids

31.85

Weight (kDa)

9.52

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	2.9e-31	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 191	4.1e-22	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	806
AccIII	TCCGGA	1 cut(s)	156
AciI	CCGC	2 cut(s)	48, 806
AclWI	GGATC	4 cut(s)	148, 246, 454, 477
AfaI	GTAC	3 cut(s)	23, 70, 839
AfiI	CCNNNNNNNGG	3 cut(s)	163, 570, 762
AgsI	TTSAA	1 cut(s)	844
AjnI	CCWGG	1 cut(s)	465
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	6 cut(s)	43, 77, 220, 350, 448, 592
AluI	AGCT	6 cut(s)	43, 77, 220, 350, 448, 592
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	478
AlwI	GGATC	4 cut(s)	148, 246, 454, 477
AlwNI	CAGNNNCTG	1 cut(s)	472
Ama87I	CYCGRG	1 cut(s)	300
Aor13HI	TCCGGA	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	15
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	45, 85
Bbv12I	GWGCWC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	83, 656
BcgI	CGANNNNNNTGC	2 cut(s)	784, 818
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	478
BfmI	CTRYAG	1 cut(s)	34
BfoI	RGCGCY	1 cut(s)	31
BlpI	GCTNAGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	130, 302, 353
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	191, 718
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	564, 756
BsaWI	WCCGGW	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 570, 762
Bse1I	ACTGG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	467
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	564, 756
BseGI	GGATG	2 cut(s)	532, 724
BseLI	CCNNNNNNNGG	3 cut(s)	163, 570, 762
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	163, 570, 762
BsmAI	GTCTC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	45, 85
Bsp13I	TCCGGA	1 cut(s)	156
Bsp143I	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
Bsp1720I	GCTNAGC	1 cut(s)	216
Bsp19I	CCATGG	2 cut(s)	564, 756
BspACI	CCGC	2 cut(s)	48, 806
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	135
BspEI	TCCGGA	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	806
BspPI	GGATC	4 cut(s)	148, 246, 454, 477
BspQI	GCTCTTC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	564, 756
BssMI	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
BssT1I	CCWWGG	2 cut(s)	564, 756
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	3 cut(s)	38, 495, 799
Bst6I	CTCTTC	2 cut(s)	438, 697
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	501, 684
BstDEI	CTNAG	2 cut(s)	216, 221
BstDSI	CCRYGG	2 cut(s)	564, 756
BstF5I	GGATG	2 cut(s)	532, 724
BstFNI	CGCG	1 cut(s)	806
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	7 cut(s)	156, 241, 355, 462, 472, 825, 834
BstMAI	GTCTC	1 cut(s)	478
BstMBI	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
BstNI	CCWGG	1 cut(s)	467
BstNSI	RCATGY	2 cut(s)	503, 686
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	806
BstX2I	RGATCY	2 cut(s)	238, 469
BstYI	RGATCY	2 cut(s)	238, 469
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	564, 756
BtsCI	GGATG	2 cut(s)	532, 724
BtsIMutI	CAGTG	3 cut(s)	43, 406, 491
Cac8I	GCNNGC	2 cut(s)	501, 684
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	22, 69, 838
CviAII	CATG	8 cut(s)	325, 430, 500, 518, 565, 683, 710, 757
CviQI	GTAC	3 cut(s)	22, 69, 838
DdeI	CTNAG	2 cut(s)	216, 221
DpnI	GATC	7 cut(s)	155, 240, 354, 461, 471, 824, 833
DpnII	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
Eam1104I	CTCTTC	2 cut(s)	438, 697
EarI	CTCTTC	2 cut(s)	438, 697
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	564, 756
Eco24I	GRGCYC	2 cut(s)	45, 85
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	564, 756
EcoT22I	ATGCAT	2 cut(s)	295, 684
EcoT38I	GRGCYC	2 cut(s)	45, 85
ErhI	CCWWGG	2 cut(s)	564, 756
FaeI	CATG	8 cut(s)	328, 433, 503, 521, 568, 686, 713, 760
FatI	CATG	8 cut(s)	324, 429, 499, 517, 564, 682, 709, 756
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	2 cut(s)	539, 731
FriOI	GRGCYC	2 cut(s)	45, 85
GlaI	GCGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	449
HaeII	RGCGCY	1 cut(s)	31
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	8 cut(s)	328, 433, 503, 521, 568, 686, 713, 760
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	4 cut(s)	132, 146, 317, 332
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	69, 378
Hpy188I	TCNGA	7 cut(s)	238, 243, 252, 339, 357, 558, 750
Hpy188III	TCNNGA	3 cut(s)	86, 157, 279
Hpy8I	GTNNAC	2 cut(s)	69, 378
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	11, 103, 697
HpyCH4III	ACNGT	3 cut(s)	38, 495, 799
HpyCH4IV	ACGT	2 cut(s)	9, 726
HpyCH4V	TGCA	5 cut(s)	143, 293, 475, 499, 682
HpyF3I	CTNAG	2 cut(s)	216, 221
HpySE526I	ACGT	2 cut(s)	9, 726
Hsp92II	CATG	8 cut(s)	328, 433, 503, 521, 568, 686, 713, 760
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
LguI	GCTCTTC	1 cut(s)	438
LweI	GCATC	3 cut(s)	130, 302, 353
MaeII	ACGT	2 cut(s)	9, 726
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	7 cut(s)	155, 240, 354, 461, 471, 824, 833
MboI	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
MboII	GAAGA	4 cut(s)	435, 455, 684, 698
MflI	RGATCY	2 cut(s)	238, 469
MhlI	GDGCHC	2 cut(s)	45, 85
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	65, 166, 216, 351, 473, 639, 669
Mph1103I	ATGCAT	2 cut(s)	295, 684
MroI	TCCGGA	1 cut(s)	156
MseI	TTAA	5 cut(s)	198, 264, 411, 617, 849
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	806
NcoI	CCATGG	2 cut(s)	564, 756
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
NlaIII	CATG	8 cut(s)	328, 433, 503, 521, 568, 686, 713, 760
NsiI	ATGCAT	2 cut(s)	295, 684
NspI	RCATGY	2 cut(s)	503, 686
NspV	TTCGAA	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	36
PaeI	GCATGC	2 cut(s)	503, 686
PciSI	GCTCTTC	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	132, 146, 317, 332
PfoI	TCCNGGA	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	472
PsuI	RGATCY	2 cut(s)	238, 469
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	3 cut(s)	23, 70, 839
RsaNI	GTAC	3 cut(s)	22, 69, 838
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	198, 264, 411, 617, 849
Sau3AI	GATC	7 cut(s)	153, 238, 352, 459, 469, 822, 831
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	45, 85
SfaNI	GCATC	3 cut(s)	130, 302, 353
SfcI	CTRYAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	170, 697
SmoI	CTYRAG	2 cut(s)	170, 697
SphI	GCATGC	2 cut(s)	503, 686
SsiI	CCGC	2 cut(s)	48, 806
SspI	AATATT	1 cut(s)	196
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	2 cut(s)	564, 756
TaaI	ACNGT	3 cut(s)	38, 495, 799
TaiI	ACGT	2 cut(s)	12, 729
TaqI	TCGA	5 cut(s)	15, 87, 135, 435, 458
TatI	WGTACW	1 cut(s)	837
TfiI	GAWTC	4 cut(s)	132, 146, 317, 332
Tru1I	TTAA	5 cut(s)	198, 264, 411, 617, 849
Tru9I	TTAA	5 cut(s)	198, 264, 411, 617, 849
TscAI	CASTG	3 cut(s)	43, 406, 498
TspDTI	ATGAA	5 cut(s)	506, 590, 593, 698, 785
TspRI	CASTG	3 cut(s)	43, 406, 498
VpaK11BI	GGWCC	1 cut(s)	166
XceI	RCATGY	2 cut(s)	503, 686
Zsp2I	ATGCAT	2 cut(s)	295, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.