Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

82804738 .. 82807737

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG606600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGACCTTGACGCAAGAAGTTTGCAGCCAAATGTTAAGGCTGTGCTTCTTGCTAAGTTGAGGGAATATAAATCAGATCTGAATAATCTGAAAAGCGAAGTTAAAAGACTTGTATCTGGCAACTTAAATGCATCTGCCCGGGATGAGTTGTTGGAATCAGGCATGGCTGATGCTTTGACGGCATCAGCAGATCAAAGATCAAGGTTGATGGCGACGACAGAGAGATTAGACAAGACCAGTGATAGAGTTAAGAACAGTAGAAGAACCATGCTGGAAACAGAAGAGCTTGGTGTTTCAATCCTTCAAGATTTGCATTCACAGCGACAGTCTCTCTTACATGCTCATAGCACGGTTCATGGAGTGGATGACAACATAGGTAAGAGCAAGAAAATTTTGACTTCCATGACAAGGAGGATGAGCAGGAACAAGTGGATAATTGGCTCAATTATTGCAGTTCTTGTCATTGCTATTGCCTTGATCTTGTACCTCAAACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

166

Amino Acids

18.55

Weight (kDa)

9.93

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 37	3.1e-08	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	74 - 139	1.3e-24	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	297, 305
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	138
ApeKI	GCWGC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	139, 140
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	195
BcnI	CCSGG	2 cut(s)	139, 140
BcoDI	GTCTC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	139, 140
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	139, 140
BmsI	GCATC	3 cut(s)	140, 160, 191
BpuMI	CCSGG	2 cut(s)	139, 140
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	148, 370, 420
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	76, 190, 197, 477
BspQI	GCTCTTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	76, 190, 197, 477
Bst4CI	ACNGT	3 cut(s)	257, 327, 352
Bst6I	CTCTTC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	148, 370, 420
BstKTI	GATC	4 cut(s)	79, 193, 200, 480
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	4 cut(s)	76, 190, 197, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 319
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	137, 138
BstV1I	GCAGC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsCI	GGATG	3 cut(s)	148, 370, 420
BtsIMutI	CAGTG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	4
Cfr9I	CCCGGG	1 cut(s)	138
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	5 cut(s)	163, 268, 338, 356, 403
CviJI	RGCY	5 cut(s)	28, 41, 167, 286, 441
CviKI_1	RGCY	5 cut(s)	28, 41, 167, 286, 441
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	4 cut(s)	78, 192, 199, 479
DpnII	GATC	4 cut(s)	76, 190, 197, 477
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	5 cut(s)	166, 271, 341, 359, 406
FaiI	YATR	8 cut(s)	69, 164, 269, 339, 345, 357, 374, 404
FatI	CATG	5 cut(s)	162, 267, 337, 355, 402
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	3 cut(s)	155, 377, 427
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	166, 271, 341, 359, 406
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	76, 81, 90
Hpy188III	TCNNGA	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	3 cut(s)	257, 327, 352
HpyCH4V	TGCA	4 cut(s)	25, 131, 313, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 319
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	166, 271, 341, 359, 406
Kzo9I	GATC	4 cut(s)	76, 190, 197, 477
LguI	GCTCTTC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	102, 144, 152, 250, 257, 406
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	3 cut(s)	140, 160, 191
MalI	GATC	4 cut(s)	78, 192, 199, 479
MboI	GATC	4 cut(s)	76, 190, 197, 477
MboII	GAAGA	2 cut(s)	273, 293
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	3 cut(s)	390, 435, 444
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	54, 405, 497
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	5 cut(s)	36, 102, 125, 249, 495
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	139, 140
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	179, 319
NciI	CCSGG	2 cut(s)	139, 140
NdeII	GATC	4 cut(s)	76, 190, 197, 477
NlaIII	CATG	5 cut(s)	166, 271, 341, 359, 406
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	276
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	5 cut(s)	36, 102, 125, 249, 495
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	76, 190, 197, 477
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	139, 140
SetI	ASST	5 cut(s)	9, 206, 288, 379, 489
SfaNI	GCATC	3 cut(s)	140, 160, 191
SinI	GGWCC	1 cut(s)	4
SmaI	CCCGGG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	390, 435, 444
StyD4I	CCNGG	2 cut(s)	137, 138
TaaI	ACNGT	3 cut(s)	257, 327, 352
TasI	AATT	3 cut(s)	390, 435, 444
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	5 cut(s)	36, 102, 125, 249, 495
Tru9I	TTAA	5 cut(s)	36, 102, 125, 249, 495
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	344
TspMI	CCCGGG	1 cut(s)	138
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	341
XmaI	CCCGGG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.