Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

2821924 .. 2823148

Gene Structure 1225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTGATGCTCTGACAGCATCAGCTGATCAGAGGTCAAGGCTAATGATGTCAACCGAGAGATTAAACAAGTCCAGTGATAGAGTTAAGGACAGCAGAAGAACCATGCTCGAAACAGAAGAGCTTGGTGTTTCGATCCTCCAGGATCTGCATTCACAGAGACAATCACTGTTGCATGCTCATACCACACTTCATGGAGTGGATGACAACATAGGGAAAAGCAAGAGAGTTCTGACTTCCATGGCAAGGAGTATGAACAGGAACAAGTGGCTTATTGGCACGGTTATTGCGGTTCTTGTCATTGTGATCGCCTTGATCTTGTACTTCAAACTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

10.19

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE_C	PF12352	20 - 83	2.7e-23	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	2 cut(s)	130, 153
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	26, 124
AluI	AGCT	2 cut(s)	26, 124
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	130, 153
AlwNI	CAGNNNCTG	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	28, 135, 145, 306, 315
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	290
BspPI	GGATC	2 cut(s)	130, 153
BspQI	GCTCTTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	28, 135, 145, 306, 315
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	171, 283
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	5 cut(s)	31, 138, 148, 309, 318
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	5 cut(s)	28, 135, 145, 306, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	82, 167
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	4 cut(s)	106, 176, 194, 241
CviJI	RGCY	5 cut(s)	5, 26, 43, 124, 271
CviKI_1	RGCY	5 cut(s)	5, 26, 43, 124, 271
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	5 cut(s)	30, 137, 147, 308, 317
DpnII	GATC	5 cut(s)	28, 135, 145, 306, 315
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	4 cut(s)	109, 179, 197, 244
FaiI	YATR	7 cut(s)	107, 177, 183, 195, 212, 242, 254
FatI	CATG	4 cut(s)	105, 175, 193, 240
FbaI	TGATCA	1 cut(s)	28
FokI	GGATG	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	125
Hin1II	CATG	4 cut(s)	109, 179, 197, 244
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	15, 33, 234
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	171, 283
HpyCH4V	TGCA	2 cut(s)	151, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	109, 179, 197, 244
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 135, 145, 306, 315
LguI	GCTCTTC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	88, 128, 155, 244
LweI	GCATC	1 cut(s)	29
MalI	GATC	5 cut(s)	30, 137, 147, 308, 317
MboI	GATC	5 cut(s)	28, 135, 145, 306, 315
MboII	GAAGA	2 cut(s)	111, 131
MflI	RGATCY	1 cut(s)	145
MnlI	CCTC	2 cut(s)	27, 149
MseI	TTAA	3 cut(s)	65, 87, 333
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	5 cut(s)	28, 135, 145, 306, 315
NlaIII	CATG	4 cut(s)	109, 179, 197, 244
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	3 cut(s)	65, 87, 333
Sau3AI	GATC	5 cut(s)	28, 135, 145, 306, 315
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	3 cut(s)	28, 38, 126
SfaNI	GCATC	1 cut(s)	29
SphI	GCATGC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	171, 283
TaqI	TCGA	2 cut(s)	111, 134
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	3 cut(s)	65, 87, 333
Tru9I	TTAA	3 cut(s)	65, 87, 333
TscAI	CASTG	2 cut(s)	82, 174
TspDTI	ATGAA	2 cut(s)	182, 269
TspRI	CASTG	2 cut(s)	82, 174
XceI	RCATGY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.