Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

3607570 .. 3608713

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG046900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTGATGTATTTGAGGGGTACGAGCGCCATTACTGCGAGCTCTCTGTCAATCTCTCAAACAAATGCACACCAACCACCATTGTTGATGGAGAGCAAAGGAAGCAGAGAAATGCAGAGATAAAAGCTGCATTGGATGAAGCTGATGATTTGATTAGGAAGATGGACCTCGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGACGACGCTTCTTCCCAAGGTGAGAGAATACAAAACCGATTTGAACAACTTGAAGAGCCTAGTTAAGAGAATAACAACAACAGAGATCAGTCATTTGGCCCGCGAGGAGTTGTTGGGGTCTGGAGAAGCAGATACCTTGACGGCCTCAAATGATCAAAGAGGAAGGTTGTTGATGACAACAGAAAGAATAAACCAGTCAAGTGACAGAATCAAGGCGAGTAGAAGAACAGTGCTGGAAACAGAGGAGCTTGGTGTTACGATTCTCCAAGAATTGCATCAACAACGCCAGTCTCTTCTACATTCCAGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATTGTAGGAGTTCTGGTCCTTGCAATCCTGCTTATTCTTTACTTGAAGATATCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

221

Amino Acids

25.08

Weight (kDa)

8.85

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	3.9e-27	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 193	1.5e-16	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	301, 521
AclWI	GGATC	1 cut(s)	602
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	244, 253, 652
AloI	GAACNNNNNNTCC	2 cut(s)	586, 618
AluBI	AGCT	4 cut(s)	43, 128, 143, 448
AluI	AGCT	4 cut(s)	43, 128, 143, 448
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	297, 342
ApeKI	GCWGC	2 cut(s)	128, 187
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	166, 298, 622
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	166, 622
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	115, 199
BccI	CCATC	2 cut(s)	83, 157
BceAI	ACGGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	260, 664
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	2 cut(s)	129, 188
BlsI	GCNGC	2 cut(s)	130, 189
Bme18I	GGWCC	2 cut(s)	166, 622
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	3 cut(s)	166, 298, 622
BmiI	GGNNCC	1 cut(s)	604
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
Bse1I	ACTGG	3 cut(s)	394, 487, 504
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	142, 532, 582
BseNI	ACTGG	3 cut(s)	394, 487, 504
BseRI	GAGGAG	2 cut(s)	320, 458
BseXI	GCAGC	2 cut(s)	115, 199
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	299, 344
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	299, 344
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	285, 352, 594
BspACI	CCGC	2 cut(s)	301, 521
BspANI	GGCC	2 cut(s)	299, 344
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	602
BspQI	GCTCTTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	394, 487, 504
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	285, 352, 594
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	430, 545
Bst6I	CTCTTC	2 cut(s)	248, 498
BstC8I	GCNNGC	3 cut(s)	41, 301, 519
BstF5I	GGATG	3 cut(s)	142, 532, 582
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	288, 355, 597
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	3 cut(s)	285, 352, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 103
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	115, 199
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	299, 344
BtsCI	GGATG	3 cut(s)	142, 532, 582
BtsIMutI	CAGTG	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	41, 301, 519
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	166, 298, 622
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	3 cut(s)	518, 565, 598
CviJI	RGCY	9 cut(s)	43, 128, 143, 190, 258, 299, 344, 448, 563
CviKI_1	RGCY	9 cut(s)	43, 128, 143, 190, 258, 299, 344, 448, 563
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	3 cut(s)	287, 354, 596
DpnII	GATC	3 cut(s)	285, 352, 594
Eam1104I	CTCTTC	2 cut(s)	248, 498
EarI	CTCTTC	2 cut(s)	248, 498
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	2 cut(s)	166, 622
Eco53kI	GAGCTC	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	521, 568, 601
FaiI	YATR	3 cut(s)	519, 566, 599
FatI	CATG	3 cut(s)	517, 564, 597
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	129, 188
FokI	GGATG	3 cut(s)	149, 539, 589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	129, 188
FspBI	CTAG	2 cut(s)	260, 664
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	129, 188
GsuI	CTGGAG	1 cut(s)	342
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	299, 344
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	521, 568, 601
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	181, 408, 460
HphI	GGTGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	3 cut(s)	357, 544, 567
HpyCH4III	ACNGT	2 cut(s)	430, 545
HpyCH4V	TGCA	7 cut(s)	69, 116, 131, 187, 475, 517, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 103
Hsp92II	CATG	3 cut(s)	521, 568, 601
HspAI	GCGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	285, 352, 594
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	8 cut(s)	306, 407, 419, 500, 517, 542, 605, 647
Lsp1109I	GCAGC	2 cut(s)	115, 199
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	260, 664
MaeIII	GTNAC	3 cut(s)	401, 454, 506
MalI	GATC	3 cut(s)	287, 354, 596
MboI	GATC	3 cut(s)	285, 352, 594
MboII	GAAGA	7 cut(s)	172, 203, 211, 265, 435, 485, 664
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	470, 511
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	10, 166, 179, 298, 353, 355, 436
MseI	TTAA	1 cut(s)	264
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	36, 103
NdeII	GATC	3 cut(s)	285, 352, 594
NlaIII	CATG	3 cut(s)	521, 568, 601
NlaIV	GGNNCC	1 cut(s)	604
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	401
NspI	RCATGY	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	408, 460
PkrI	GCNGC	2 cut(s)	130, 189
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	3 cut(s)	166, 298, 622
PspXI	VCTCGAGB	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	129, 188
Sau3AI	GATC	3 cut(s)	285, 352, 594
Sau96I	GGNCC	3 cut(s)	166, 298, 622
SchI	GAGTC	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	9 cut(s)	45, 130, 145, 171, 222, 338, 368, 450, 555
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	166, 622
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	521
Sse9I	AATT	2 cut(s)	470, 511
SsiI	CCGC	2 cut(s)	301, 521
SspMI	CTAG	2 cut(s)	260, 664
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	430, 545
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	470, 511
TfiI	GAWTC	2 cut(s)	408, 460
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	128, 187
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	153, 543
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	166, 622
XceI	RCATGY	1 cut(s)	521
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	2 cut(s)	260, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.