Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397643.1

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1211

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgtacttttactttaagtacctattacctacaaagcaaaagaagcaaaagatttctgaaataaaggctggaatagatgaagcagaatctttgatccggaaaatggaccttgacgcaagaagtttgcagccaaatgttaaggctgtgcttcttgctaagttgagggaatataaatcagatctgaataatctgaaaagcgaagttaaaagacttgtatctggcaacttaaatgcatctgcccgggatgagttgttggaatcaggcatggctgatgctttgacggcatcagcagatcagagatcaaggttgatggcgacgacagagagattagacaagaccagtgatagagttaagaacagtagaaggaccatgctggaaacagaagagcttggtgtttcaatccttcaagatttgcattcacagcgacagtctctcttacatgctcatagcacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

151

Amino Acids

17.17

Weight (kDa)

9.45

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	96
AclWI	GGATC	1 cut(s)	88
AfaI	GTAC	2 cut(s)	5, 20
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	399, 407
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	106, 366
AsuC2I	CCSGG	2 cut(s)	241, 242
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	106, 366
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	297
BcnI	CCSGG	2 cut(s)	241, 242
BcoDI	GTCTC	1 cut(s)	435
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	129
Bme1390I	CCNGG	2 cut(s)	241, 242
Bme18I	GGWCC	2 cut(s)	106, 366
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	106, 366
BmrFI	CCNGG	2 cut(s)	241, 242
BmsI	GCATC	3 cut(s)	242, 262, 293
BpuMI	CCSGG	2 cut(s)	241, 242
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	97, 241
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	435
BsmI	GAATGC	1 cut(s)	415
BsoBI	CYCGRG	1 cut(s)	240
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	93, 178, 292, 299
BspEI	TCCGGA	1 cut(s)	96
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	93, 178, 292, 299
Bst4CI	ACNGT	2 cut(s)	359, 429
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	4 cut(s)	96, 181, 295, 302
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	4 cut(s)	93, 178, 292, 299
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 281, 421
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	239, 240
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	106, 366
Cfr9I	CCCGGG	1 cut(s)	240
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	4, 19
CviAII	CATG	3 cut(s)	265, 370, 440
CviJI	RGCY	5 cut(s)	68, 130, 143, 269, 388
CviKI_1	RGCY	5 cut(s)	68, 130, 143, 269, 388
CviQI	GTAC	2 cut(s)	4, 19
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	95, 180, 294, 301
DpnII	GATC	4 cut(s)	93, 178, 292, 299
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	106, 366
Eco88I	CYCGRG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	3 cut(s)	268, 373, 443
FaiI	YATR	5 cut(s)	171, 266, 371, 441, 447
FatI	CATG	3 cut(s)	264, 369, 439
Fnu4HI	GCNGC	1 cut(s)	128
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	128
HapII	CCGG	2 cut(s)	97, 241
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	268, 373, 443
HinfI	GANTC	2 cut(s)	86, 257
HpaII	CCGG	2 cut(s)	97, 241
Hpy188I	TCNGA	5 cut(s)	58, 178, 183, 192, 297
Hpy188III	TCNNGA	2 cut(s)	97, 407
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	357, 413
HpyCH4III	ACNGT	2 cut(s)	359, 429
HpyCH4V	TGCA	3 cut(s)	127, 233, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 281, 421
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	268, 373, 443
Kpn2I	TCCGGA	1 cut(s)	96
Kzo9I	GATC	4 cut(s)	93, 178, 292, 299
LguI	GCTCTTC	1 cut(s)	378
LpnPI	CCDG	7 cut(s)	54, 110, 204, 246, 254, 352, 359
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	242, 262, 293
MalI	GATC	4 cut(s)	95, 180, 294, 301
MboI	GATC	4 cut(s)	93, 178, 292, 299
MboII	GAAGA	1 cut(s)	395
MflI	RGATCY	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	1 cut(s)	156
Mph1103I	ATGCAT	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	96
MseI	TTAA	5 cut(s)	15, 138, 204, 227, 351
MspI	CCGG	2 cut(s)	97, 241
MspR9I	CCNGG	2 cut(s)	241, 242
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	3 cut(s)	43, 281, 421
NciI	CCSGG	2 cut(s)	241, 242
NdeII	GATC	4 cut(s)	93, 178, 292, 299
NlaIII	CATG	3 cut(s)	268, 373, 443
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	378
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	86, 257
PkrI	GCNGC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	106, 366
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	5, 20
RsaNI	GTAC	2 cut(s)	4, 19
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	5 cut(s)	15, 138, 204, 227, 351
SatI	GCNGC	1 cut(s)	128
Sau3AI	GATC	4 cut(s)	93, 178, 292, 299
Sau96I	GGNCC	2 cut(s)	106, 366
ScrFI	CCNGG	2 cut(s)	241, 242
SetI	ASST	5 cut(s)	24, 31, 111, 308, 390
SfaNI	GCATC	3 cut(s)	242, 262, 293
SinI	GGWCC	2 cut(s)	106, 366
SmaI	CCCGGG	1 cut(s)	242
StyD4I	CCNGG	2 cut(s)	239, 240
TaaI	ACNGT	2 cut(s)	359, 429
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	86, 257
Tru1I	TTAA	5 cut(s)	15, 138, 204, 227, 351
Tru9I	TTAA	5 cut(s)	15, 138, 204, 227, 351
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	93
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	106, 366
XceI	RCATGY	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.