Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

15821293 .. 15823840

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGTGACGTGTTTGATGGATATGAGCGACAATACTGTGAGCTCTCGGCGAGTCTTTCAAAGAAGTGTTCCTCTGCTATTTCGCTTGATGGAGAACAAAAGAAGCAGAAGTTGTCTGAAATAAAATCCGGGCTGGAAAATGCAGAAGTATTGATTAGGAAAATGGATCTCGAGGCAAGGACCCTTCCACCTAATCTTAAGTCCAGCCTCCTTGTCAAATTAAGAGAATTCAAGTCTGATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCACATCTGGACAGTTGAACGCTGCTGCTCGTGATGAGTTGCTAGAAGCTGGTATGGCTGACACAAAGACGGCTTCAGCTGATCAGAGAGCAAGATTGATGATGTCAACTGAGCGTCTGGGCCGAACCACTGACAGAGTCAAGGACAGTCGTAGAACAATGATGGAGACTGAAGAAATCGGTGTTTCAATCCTCCAAGACTTGCACGGTCAGAGACAGTCTCTCTTACGTGCCCACGAAACGCTTCATGGAGTAGACGATAACATTGGAAAGAGCAAGAAGATCTTGACAGACATGACGAGGAGGATGAACAAGAACAAATGGACCATTGGAGCCATCATCATCGCATTGATTGCCGCCATTTTCATCATCTTGTACTTCAAACTCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006891 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

221

Amino Acids

24.95

Weight (kDa)

9.47

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	3.9e-32	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	128 - 193	1.9e-24	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	1 cut(s)	627
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	3 cut(s)	279, 330, 462
AfaI	GTAC	1 cut(s)	647
AflII	CTTAAG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	6 cut(s)	60, 232, 253, 289, 459, 652
AjiI	CACGTC	1 cut(s)	10
AluBI	AGCT	3 cut(s)	43, 320, 350
AluI	AGCT	3 cut(s)	43, 320, 350
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	431, 478, 495
AlwI	GGATC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	293, 296
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	2 cut(s)	248, 513
AspS9I	GGNCC	3 cut(s)	180, 391, 594
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	180, 594
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	280, 283
BccI	CCATC	4 cut(s)	11, 83, 427, 614
BceAI	ACGGC	1 cut(s)	357
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	431, 478, 495
BfaI	CTAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	197
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	3 cut(s)	294, 297, 627
BlsI	GCNGC	3 cut(s)	295, 298, 628
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	180, 594
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	3 cut(s)	180, 391, 594
BmiI	GGNNCC	2 cut(s)	182, 604
BmrFI	CCNGG	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpuMI	CCSGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	500
BseGI	GGATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	280, 283
BshFI	GGCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	129
BsmAI	GTCTC	3 cut(s)	431, 478, 495
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	45, 505
Bsp143I	GATC	4 cut(s)	166, 238, 352, 552
BspACI	CCGC	1 cut(s)	627
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	182, 604
BspPI	GGATC	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	197
BssMI	GATC	4 cut(s)	166, 238, 352, 552
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	5 cut(s)	38, 285, 419, 479, 489
Bst6I	CTCTTC	1 cut(s)	260
BstAFI	CTTAAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	582
BstKTI	GATC	4 cut(s)	169, 241, 355, 555
BstMAI	GTCTC	3 cut(s)	431, 478, 495
BstMBI	GATC	4 cut(s)	166, 238, 352, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 623
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	2 cut(s)	280, 283
BstX2I	RGATCY	2 cut(s)	166, 552
BstYI	RGATCY	2 cut(s)	166, 552
BsuRI	GGCC	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	582
BtsIMutI	CAGTG	1 cut(s)	399
Cfr13I	GGNCC	3 cut(s)	180, 391, 594
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	2 cut(s)	518, 565
CviJI	RGCY	9 cut(s)	43, 133, 207, 320, 329, 344, 350, 393, 605
CviKI_1	RGCY	9 cut(s)	43, 133, 207, 320, 329, 344, 350, 393, 605
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	168, 240, 354, 554
DpnII	GATC	4 cut(s)	166, 238, 352, 552
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	180, 594
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	3 cut(s)	279, 330, 462
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	521, 568
FaiI	YATR	4 cut(s)	24, 326, 519, 566
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FatI	CATG	2 cut(s)	517, 564
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	294, 297, 627
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	294, 297, 627
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	3 cut(s)	294, 297, 627
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	521, 568
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	52, 270, 408
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	378, 526
Hpy188I	TCNGA	5 cut(s)	118, 238, 243, 357, 483
Hpy188III	TCNNGA	4 cut(s)	170, 279, 302, 556
Hpy8I	GTNNAC	2 cut(s)	378, 526
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	5 cut(s)	38, 285, 419, 479, 489
HpyCH4IV	ACGT	2 cut(s)	9, 499
HpyCH4V	TGCA	2 cut(s)	143, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 623
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	2 cut(s)	9, 499
Hsp92II	CATG	2 cut(s)	521, 568
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	166, 238, 352, 552
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	6 cut(s)	119, 142, 217, 264, 306, 374
Lsp1109I	GCAGC	2 cut(s)	280, 283
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	2 cut(s)	9, 499
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	168, 240, 354, 554
MboI	GATC	4 cut(s)	166, 238, 352, 552
MboII	GAAGA	3 cut(s)	277, 455, 562
MflI	RGATCY	2 cut(s)	166, 552
MhlI	GDGCHC	2 cut(s)	45, 505
MluCI	AATT	3 cut(s)	218, 227, 247
MlyI	GAGTC	2 cut(s)	61, 417
MnlI	CCTC	6 cut(s)	82, 166, 218, 473, 564, 567
MroXI	GAANNNNTTC	2 cut(s)	248, 513
MseI	TTAA	2 cut(s)	198, 221
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	326, 623
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	4 cut(s)	166, 238, 352, 552
NlaIII	CATG	2 cut(s)	521, 568
NlaIV	GGNNCC	2 cut(s)	182, 604
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	5
PaeR7I	CTCGAG	1 cut(s)	170
PdmI	GAANNNNTTC	2 cut(s)	248, 513
PfeI	GAWTC	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	407
PkrI	GCNGC	3 cut(s)	295, 298, 628
PleI	GAGTC	2 cut(s)	60, 416
PpsI	GAGTC	2 cut(s)	60, 416
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	182, 604
PspPI	GGNCC	3 cut(s)	180, 391, 594
PspPPI	RGGWCCY	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	166, 552
PsyI	GACNNNGTC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	198, 221
SatI	GCNGC	3 cut(s)	294, 297, 627
Sau3AI	GATC	4 cut(s)	166, 238, 352, 552
Sau96I	GGNCC	3 cut(s)	180, 391, 594
SchI	GAGTC	2 cut(s)	61, 417
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	2 cut(s)	45, 505
SetI	ASST	6 cut(s)	12, 45, 193, 322, 352, 502
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	2 cut(s)	180, 594
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	170, 197
SmoI	CTYRAG	2 cut(s)	170, 197
Sse9I	AATT	3 cut(s)	218, 227, 247
SsiI	CCGC	1 cut(s)	627
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	5 cut(s)	38, 285, 419, 479, 489
TaiI	ACGT	2 cut(s)	12, 502
TaqI	TCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	218, 227, 247
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	198, 221
Tru9I	TTAA	2 cut(s)	198, 221
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	293, 296
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	506, 593, 625
TspRI	CASTG	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	180, 594
XapI	RAATTY	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	2 cut(s)	248, 513
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.