Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00887

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

13788 .. 14985

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGTGATGTATTTGAAAGGTACGAGCGCCATTACTGCGATCTCTCCGCCAATCTCTCAAACAAATGCACAACCACCACCACCACCACCATCCAAAGGAAGCAGAGAACTGCAGAGACAGAAGTTGCATTGAATGAAGCTGATGATTTGATTAGGAAGATGGACCTCGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGGCAATGCTTATTGCCAAGGTGAGAGAATACAAAACTGATTTGAACAACTTGAAGAGCCAAGAAAGAATAAACCAGTCGAGTGACAGAATCAAGTCGAGTAGAAGAACAGTGCTCGAAACAGAGGAGCTTGGTATCACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATGCCAGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGTCATGGCAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCAGGTTCCATAGTAGGAGTTCTCGTCCTTGCCATCCTGCTTATTCTACACTTGAAGATATCACACTAGGCTTACTGTCCTGCCATGCCTTGTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

193

Amino Acids

22.23

Weight (kDa)

9.27

Isoelectric Point (pI)

66.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 86	1.1e-23	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	87 - 152	1.7e-17	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	167
AciI	CCGC	2 cut(s)	48, 398
AclWI	GGATC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	17, 133, 241, 250, 536
AjnI	CCWGG	1 cut(s)	482
AloI	GAACNNNNNNTCC	2 cut(s)	463, 495
AluBI	AGCT	2 cut(s)	140, 325
AluI	AGCT	2 cut(s)	140, 325
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	110, 372
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	3 cut(s)	98, 154, 522
BciT130I	CCWGG	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	110, 372
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	111, 182
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	481, 488
BmrFI	CCNGG	1 cut(s)	484
BmsI	GCATC	1 cut(s)	361
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	3 cut(s)	271, 364, 381
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	90, 409, 459, 514
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	3 cut(s)	271, 364, 381
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	110, 372
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	40, 471
BspACI	CCGC	2 cut(s)	48, 398
BspLI	GGNNCC	2 cut(s)	481, 488
BspMAI	CTGCAG	2 cut(s)	115, 186
BspPI	GGATC	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	271, 364, 381
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	40, 471
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	3 cut(s)	307, 422, 558
Bst6I	CTCTTC	2 cut(s)	245, 375
BstC8I	GCNNGC	1 cut(s)	396
BstF5I	GGATG	4 cut(s)	90, 409, 459, 514
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	43, 474
BstMAI	GTCTC	2 cut(s)	110, 372
BstMBI	GATC	2 cut(s)	40, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	484
BstNSI	RCATGY	2 cut(s)	380, 398
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	2 cut(s)	111, 182
BstV1I	GCAGC	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	90, 409, 459, 514
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	377, 395, 442, 475, 566
CviJI	RGCY	5 cut(s)	140, 187, 255, 325, 552
CviKI_1	RGCY	5 cut(s)	140, 187, 255, 325, 552
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	42, 473
DpnII	GATC	2 cut(s)	40, 471
Eam1104I	CTCTTC	2 cut(s)	245, 375
EarI	CTCTTC	2 cut(s)	245, 375
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	213
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	482
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	5 cut(s)	380, 398, 445, 478, 569
FaiI	YATR	6 cut(s)	378, 396, 443, 476, 492, 567
FatI	CATG	5 cut(s)	376, 394, 441, 474, 565
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	4 cut(s)	77, 416, 466, 501
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	31
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	380, 398, 445, 478, 569
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	3 cut(s)	178, 285, 337
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	3 cut(s)	190, 421, 444
HpyCH4III	ACNGT	3 cut(s)	307, 422, 558
HpyCH4V	TGCA	6 cut(s)	69, 113, 128, 184, 352, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	380, 398, 445, 478, 569
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	40, 471
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	8 cut(s)	284, 377, 394, 419, 469, 496, 531, 574
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	278, 383
MalI	GATC	2 cut(s)	42, 473
MboI	GATC	2 cut(s)	40, 471
MboII	GAAGA	5 cut(s)	169, 262, 312, 362, 548
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	163, 176, 313
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	1 cut(s)	36
NdeII	GATC	2 cut(s)	40, 471
NlaIII	CATG	5 cut(s)	380, 398, 445, 478, 569
NlaIV	GGNNCC	2 cut(s)	481, 488
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	2 cut(s)	380, 398
PaeI	GCATGC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	285, 337
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	2 cut(s)	481, 488
PspPI	GGNCC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	167
PstI	CTGCAG	2 cut(s)	115, 186
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	40, 471
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	7 cut(s)	23, 142, 168, 219, 327, 432, 488
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	2 cut(s)	111, 182
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	2 cut(s)	48, 398
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	307, 422, 558
TaqI	TCGA	4 cut(s)	168, 275, 293, 312
TasI	AATT	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	285, 337
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	150, 420, 566
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	2 cut(s)	380, 398
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.