Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

65831670 .. 65832369

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0528500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGATTACTTGGAGGCTCATCAGGTTCTGAAGATGAGGAAGAGAGAAGATCAGGATCAGAAAGATCAGAAGGATCAGAAGGATCAGAAAGATCAGAAGGATCGGAAAGATCAGGATCAGAAGATGAAGATGAAGATGAAGATGAAGAGGAGGAGGAAGATGAAGACGAAGATGAAGATGAAGATGAGAAAGACTCTGAAGGTGAAGAAGAGGAAGATGGGAAAGGGAAGAAGAAGAAGAAGAAGAAGGGAATGAGATCTAGGCTCATGTCGAAGGCAAAAAAATCAGTTTTTAAGAAAGTCATTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

4.36

Isoelectric Point (pI)

105.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	64, 82, 91, 109, 124
AcuI	CTGAAG	2 cut(s)	51, 219
AlwI	GGATC	5 cut(s)	64, 82, 91, 109, 124
AlwNI	CAGNNNCTG	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	171
BccI	CCATC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	261
BglII	AGATCT	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BsaBI	GATNNNNATC	2 cut(s)	55, 115
Bse8I	GATNNNNATC	2 cut(s)	55, 115
BseJI	GATNNNNATC	2 cut(s)	55, 115
BseRI	GAGGAG	2 cut(s)	164, 167
BspPI	GGATC	5 cut(s)	64, 82, 91, 109, 124
Bst6I	CTCTTC	3 cut(s)	36, 141, 204
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	29
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	3 cut(s)	18, 265, 309
CviKI_1	RGCY	3 cut(s)	18, 265, 309
Eam1104I	CTCTTC	3 cut(s)	36, 141, 204
EarI	CTCTTC	3 cut(s)	36, 141, 204
Eco57I	CTGAAG	2 cut(s)	51, 219
FaeI	CATG	1 cut(s)	271
FaiI	YATR	1 cut(s)	269
FatI	CATG	1 cut(s)	267
FspBI	CTAG	1 cut(s)	261
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	9 cut(s)	31, 61, 70, 79, 88, 97, 106, 121, 199
Hpy188III	TCNNGA	2 cut(s)	54, 114
HpyAV	CCTTC	6 cut(s)	65, 74, 92, 194, 241, 268
Hsp92II	CATG	1 cut(s)	271
LpnPI	CCDG	3 cut(s)	9, 39, 99
MaeI	CTAG	1 cut(s)	261
MflI	RGATCY	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	8, 31, 142, 145, 148, 205
MseI	TTAA	1 cut(s)	294
NlaIII	CATG	1 cut(s)	271
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	294
SchI	GAGTC	1 cut(s)	188
SetI	ASST	2 cut(s)	28, 205
SgeI	CNNG	6 cut(s)	23, 36, 66, 126, 273, 280
SspMI	CTAG	1 cut(s)	261
TaqI	TCGA	1 cut(s)	272
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	7 cut(s)	141, 147, 153, 159, 177, 189, 195
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.