Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

19055565 .. 19057349

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTGAGGTGTTTGAGGGGTACGAGCGCCAATACTGCGAGCTCTCAGCTAATCTCTCAAGCAAGTGCACGGCTGCCACCGCCGTGGATGGAGGAGAGACAAAAAAGCAGATAATTTCAGAGGTAAAAGCTGGATTAGAGGATGCAGATACTTTGCTGAGGAAAATGGACCTTGAGGCGAGGAGTTTGCAGCCAAGTGTGAAGGCTGCTCTTCTTGCCAAGCTAAGAGAATACAAGGTTTATTTGAACAATTTGAAGAGCCAACTGAAGAGAATCGCATCACCTGTCCTGAATTTCTCAGCTCGGGACGAGCTGTTGGAGCCCGGAATGGCAGATTCCTTGACGACATCTAACGATCAACGAGGAAGATTGTTGATGACAACTGACATGTTAAATCAGTCGACGGACAGAATCAAGGAGAGTAGAAGAGCAATGCTGGAAACCGAGGAGCTTGGGGTCTCAATCCTCCAAGATTTGCACCAACAACGCCAGTCACTTCTACATGTTCACAATACACTCCACGGGGCGGATGAAAGTATCAGCAAGAGCAAGAAGGTGCTGACCGCCATGACGAGGAGTATGAACAGGAACAAATGGATTGTCGGCTCCATCATCGGAGTCTTGGCCGTTGCAATCTTGTTTATCCTTTATCTTAAGATTACGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

9.02

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	401
AccII	CGCG	1 cut(s)	664
AciI	CCGC	3 cut(s)	81, 527, 564
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	526, 573
AflII	CTTAAG	1 cut(s)	653
AflIII	ACRYGT	2 cut(s)	387, 502
AgsI	TTSAA	2 cut(s)	247, 256
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	7 cut(s)	43, 50, 131, 223, 302, 313, 451
AluI	AGCT	7 cut(s)	43, 50, 131, 223, 302, 313, 451
Alw21I	GWGCWC	2 cut(s)	45, 71
Alw26I	GTCTC	2 cut(s)	92, 463
Alw44I	GTGCAC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	624
ApaLI	GTGCAC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	74, 190, 206
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AspLEI	GCGC	2 cut(s)	30, 666
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	45, 324
Bbv12I	GWGCWC	2 cut(s)	45, 71
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	3 cut(s)	61, 193, 202
BccI	CCATC	2 cut(s)	83, 617
BceAI	ACGGC	3 cut(s)	68, 87, 611
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	92, 463
BfaI	CTAG	1 cut(s)	667
BfoI	RGCGCY	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	653
BisI	GCNGC	3 cut(s)	75, 191, 207
BlsI	GCNGC	3 cut(s)	76, 192, 208
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	321, 607
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	133, 287
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	43, 194
BpuMI	CCSGG	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	84, 444, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 573
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	84, 444, 520
BseGI	GGATG	3 cut(s)	94, 148, 535
BseLI	CCNNNNNNNGG	2 cut(s)	526, 573
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	3 cut(s)	60, 149, 312
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	4 cut(s)	108, 196, 461, 589
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	61, 193, 202
Bsh1236I	CGCG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	626
BsiHKAI	GWGCWC	2 cut(s)	45, 71
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	526, 573
BsmAI	GTCTC	2 cut(s)	92, 463
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	626
Bso31I	GGTCTC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	45, 71, 324
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	81, 527, 564
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	3 cut(s)	59, 150, 311
BspFNI	CGCG	1 cut(s)	664
BspLI	GGNNCC	2 cut(s)	321, 607
BspQI	GCTCTTC	3 cut(s)	216, 251, 421
BspTI	CTTAAG	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	84, 444, 520
BssMI	GATC	1 cut(s)	355
Bst6I	CTCTTC	4 cut(s)	216, 251, 263, 421
BstAFI	CTTAAG	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	4 cut(s)	46, 158, 224, 298
BstDSI	CCRYGG	2 cut(s)	84, 520
BstF5I	GGATG	3 cut(s)	94, 148, 535
BstFNI	CGCG	1 cut(s)	664
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	2 cut(s)	30, 666
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	2 cut(s)	92, 463
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 80, 215, 319
BstNSI	RCATGY	2 cut(s)	391, 506
BstSCI	CCNGG	1 cut(s)	322
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	3 cut(s)	61, 193, 202
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	626
BtgI	CCRYGG	2 cut(s)	84, 520
BtsCI	GGATG	3 cut(s)	94, 148, 535
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	2 cut(s)	30, 666
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	388, 503, 568
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	4 cut(s)	46, 158, 224, 298
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	4 cut(s)	216, 251, 263, 421
EarI	CTCTTC	4 cut(s)	216, 251, 263, 421
EciI	GGCGGA	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	2 cut(s)	45, 324
Eco31I	GGTCTC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	45, 324
FaeI	CATG	3 cut(s)	391, 506, 571
FaiI	YATR	4 cut(s)	389, 504, 569, 581
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	387, 502, 567
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	3 cut(s)	75, 191, 207
FokI	GGATG	3 cut(s)	101, 155, 542
FriOI	GRGCYC	2 cut(s)	45, 324
Fsp4HI	GCNGC	3 cut(s)	75, 191, 207
FspBI	CTAG	1 cut(s)	667
GlaI	GCGC	2 cut(s)	29, 665
GluI	GCNGC	3 cut(s)	75, 191, 207
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	2 cut(s)	30, 666
Hin1II	CATG	3 cut(s)	391, 506, 571
Hin6I	GCGC	2 cut(s)	28, 664
HinP1I	GCGC	2 cut(s)	28, 664
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	273, 335, 411, 618
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	3 cut(s)	69, 402, 508
Hpy188I	TCNGA	2 cut(s)	121, 617
Hpy188III	TCNNGA	2 cut(s)	289, 305
Hpy8I	GTNNAC	3 cut(s)	69, 402, 508
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	196, 547
HpyCH4V	TGCA	5 cut(s)	69, 146, 190, 478, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 80, 215, 319
HpyF3I	CTNAG	4 cut(s)	46, 158, 224, 298
Hsp92II	CATG	3 cut(s)	391, 506, 571
HspAI	GCGC	2 cut(s)	28, 664
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	3 cut(s)	216, 251, 421
LmnI	GCTCC	3 cut(s)	319, 448, 611
LpnPI	CCDG	7 cut(s)	117, 297, 302, 337, 422, 503, 571
Lsp1109I	GCAGC	3 cut(s)	61, 193, 202
LweI	GCATC	2 cut(s)	133, 287
MaeI	CTAG	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	5 cut(s)	203, 268, 280, 378, 438
MhlI	GDGCHC	3 cut(s)	45, 71, 324
MluCI	AATT	3 cut(s)	114, 250, 292
MlyI	GAGTC	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	297
MseI	TTAA	2 cut(s)	392, 654
MslI	CAYNNNNRTG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	4 cut(s)	36, 80, 215, 319
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	391, 506, 571
NlaIV	GGNNCC	2 cut(s)	321, 607
NmuCI	GTSAC	1 cut(s)	492
NspI	RCATGY	2 cut(s)	391, 506
OliI	CACNNNNGTG	1 cut(s)	83
PciI	ACATGT	2 cut(s)	387, 502
PciSI	GCTCTTC	3 cut(s)	216, 251, 421
PfeI	GAWTC	3 cut(s)	273, 335, 411
PkrI	GCNGC	3 cut(s)	76, 192, 208
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PscI	ACATGT	2 cut(s)	387, 502
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	321, 607
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	45
SalI	GTCGAC	1 cut(s)	400
SapI	GCTCTTC	3 cut(s)	216, 251, 421
SaqAI	TTAA	2 cut(s)	392, 654
SatI	GCNGC	3 cut(s)	75, 191, 207
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	3 cut(s)	45, 71, 324
SfaNI	GCATC	2 cut(s)	133, 287
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	3 cut(s)	58, 173, 653
SmoI	CTYRAG	3 cut(s)	58, 173, 653
Sse9I	AATT	3 cut(s)	114, 250, 292
SsiI	CCGC	3 cut(s)	81, 527, 564
SspMI	CTAG	1 cut(s)	667
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	322
TaqI	TCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	114, 250, 292
TfiI	GAWTC	3 cut(s)	273, 335, 411
Tru1I	TTAA	2 cut(s)	392, 654
Tru9I	TTAA	2 cut(s)	392, 654
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	3 cut(s)	74, 190, 206
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	2 cut(s)	546, 596
TspGWI	ACGGA	1 cut(s)	419
Vha464I	CTTAAG	1 cut(s)	653
VneI	GTGCAC	1 cut(s)	67
VpaK11BI	GGWCC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	292
XceI	RCATGY	2 cut(s)	391, 506
XmiI	GTMKAC	1 cut(s)	401
XspI	CTAG	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.