Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Forward (+)

8246082 .. 8247856

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTGATGTGTTTGAGGGGTACGAACGCCAATACTGCGAGCTCTCCGTCAATGTCTCAAACAAATGCACACCCACCACCACTGTTGATGGAGAACAAAGGAAGCAGAGAACTGAAGAGATGAAAGCTGCATTTGATGAAGCTGATGATTTGATTAGGAAGATGGACCTCGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGGCGCCGCTTCTTGCCAAGGTGAGAGAATATAAAACCGATTTGAACAACTTGAAGAGCCAAGTTAAGAGAATAACAGCACCAGAGATCAGTCCTTCAGCCCGAGACGAGTTGTTGGAGTCTAGAGAAGCAGATAACTACTTGACGGCCTCAAATGATCAGAGAGGAAGGTTGTTGATGGGAACAGAAAGAATAAACCAGTCGAGTGACAGAATCAAGGCGAGTAGAAGAACAGTGCTGGAAACCGAGGAGCTTGGCGTTTCGATCCTCCAAGACTTGCATCAACAACGCCAGTCCCTTCTACATGCCAGTAACACTTTGCATGGGTTAGATGAAACTATTACCAAGAGTAAGAAGGTTCTGGTTGCCATGACAAGAAGGATGAGCAGAAATAAATGGATCATGGGTTCCATAGTAGGAGTTCTCGTCCTCGCAATCCTGCTTATTCTTTACTTGAAGATATCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

223

Amino Acids

25.24

Weight (kDa)

8.81

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 91	1.8e-29	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	129 - 173	1.5e-12	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	457, 605
AcuI	CTGAAG	2 cut(s)	135, 279
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	244, 253, 655
AloI	GAACNNNNNNTCC	2 cut(s)	589, 621
AluBI	AGCT	4 cut(s)	43, 128, 143, 451
AluI	AGCT	4 cut(s)	43, 128, 143, 451
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	61, 297
AlwI	GGATC	2 cut(s)	457, 605
Ama87I	CYCGRG	2 cut(s)	170, 300
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	128, 187
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	2 cut(s)	170, 300
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	115, 199
BccI	CCATC	3 cut(s)	83, 157, 370
BceAI	ACGGC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	61, 297
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	3 cut(s)	129, 188, 206
BlsI	GCNGC	3 cut(s)	130, 189, 207
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	170, 300
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	204, 607
BmsI	GCATC	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	216, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bse1I	ACTGG	3 cut(s)	397, 490, 507
BseDI	CCNNGG	2 cut(s)	216, 444
BseGI	GGATG	1 cut(s)	585
BseNI	ACTGG	3 cut(s)	397, 490, 507
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	115, 199
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	170, 300
BslFI	GGGAC	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	61, 297
BsmBI	CGTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	347
BsoBI	CYCGRG	2 cut(s)	170, 300
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	285, 355, 462, 597
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	347
BspLI	GGNNCC	2 cut(s)	204, 607
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	2 cut(s)	457, 605
BspQI	GCTCTTC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	397, 490, 507
BssECI	CCNNGG	2 cut(s)	216, 444
BssMI	GATC	4 cut(s)	285, 355, 462, 597
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	85, 433
Bst6I	CTCTTC	2 cut(s)	111, 248
BstACI	GRCGYC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	4 cut(s)	288, 358, 465, 600
BstMAI	GTCTC	2 cut(s)	61, 297
BstMBI	GATC	4 cut(s)	285, 355, 462, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	115, 199
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	81, 438
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	4 cut(s)	503, 521, 568, 601
CviJI	RGCY	8 cut(s)	43, 128, 143, 190, 258, 299, 347, 451
CviKI_1	RGCY	8 cut(s)	43, 128, 143, 190, 258, 299, 347, 451
CviQI	GTAC	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	204
DpnI	GATC	4 cut(s)	287, 357, 464, 599
DpnII	GATC	4 cut(s)	285, 355, 462, 597
Eam1104I	CTCTTC	2 cut(s)	111, 248
EarI	CTCTTC	2 cut(s)	111, 248
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	166
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	135, 279
Eco88I	CYCGRG	2 cut(s)	170, 300
EcoICRI	GAGCTC	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	204
EheI	GGCGCC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	297
FaeI	CATG	4 cut(s)	506, 524, 571, 604
FaiI	YATR	6 cut(s)	231, 504, 522, 569, 602, 611
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	502, 520, 567, 600
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	129, 188, 206
FokI	GGATG	1 cut(s)	592
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	129, 188, 206
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	3 cut(s)	129, 188, 206
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	205
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	506, 524, 571, 604
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	3 cut(s)	181, 317, 411
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	1 cut(s)	321
HpyAV	CCTTC	6 cut(s)	193, 303, 360, 506, 547, 570
HpyCH4III	ACNGT	2 cut(s)	85, 433
HpyCH4V	TGCA	5 cut(s)	69, 131, 187, 478, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	506, 524, 571, 604
HspAI	GCGC	1 cut(s)	203
KasI	GGCGCC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	285, 355, 462, 597
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	294, 410, 422, 503, 520, 545, 650
Lsp1109I	GCAGC	2 cut(s)	115, 199
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	404, 509
MalI	GATC	4 cut(s)	287, 357, 464, 599
MboI	GATC	4 cut(s)	285, 355, 462, 597
MboII	GAAGA	5 cut(s)	128, 172, 265, 438, 667
MhlI	GDGCHC	1 cut(s)	45
Mly113I	GGCGCC	1 cut(s)	203
MlyI	GAGTC	2 cut(s)	190, 326
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	10, 166, 179, 356, 358, 439, 476, 638
MseI	TTAA	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	36
NarI	GGCGCC	1 cut(s)	203
NdeII	GATC	4 cut(s)	285, 355, 462, 597
NlaIII	CATG	4 cut(s)	506, 524, 571, 604
NlaIV	GGNNCC	2 cut(s)	204, 607
NmeAIII	GCCGAG	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	130, 189, 207
PleI	GAGTC	2 cut(s)	189, 325
PluTI	GGCGCC	1 cut(s)	206
PpsI	GAGTC	2 cut(s)	189, 325
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	204, 607
PspPI	GGNCC	1 cut(s)	166
PspXI	VCTCGAGB	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	129, 188, 206
Sau3AI	GATC	4 cut(s)	285, 355, 462, 597
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	190, 326
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	45, 130, 145, 171, 222, 371, 453, 558
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	185
SfoI	GGCGCC	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	206
SspDI	GGCGCC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	85, 433
TaqI	TCGA	3 cut(s)	171, 401, 461
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	88, 438
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	128, 187
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	137, 153, 546
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	88, 438
VpaK11BI	GGWCC	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	320
XceI	RCATGY	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	170
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.