Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000297.1

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

23900 .. 26242

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000297.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgttaggtcttatcttccatggtgggctcgacgagggaacaaggcggagctccggcatggactgcatcattggtggatttgagaagagagattggagaagaggtgtgtcggaggaggagaaggaggagaacggagacagaggcagagaaggaggagagtggagacggaggccgaggcgaagagtagttgggtgctggttggaggtggaggatgaggaagaggaggtcgagtgctgtgtcatggtggagcaaaggaagcagagaaatgccgagataaaagctgcattggatgaagctgatgatttgattaggaagatggacctagaggcaaggagtctgcagccgagtgtgaagacgacgcttcttcccaaggtgagagaatacaaaaccgatttgaacaacttgaagagccaagttaagagaataacaacaccagagatcagtcatttagcccgcgaggagttgttggggtctggagaagcagataccttgacggcctcaaatgatcaaagaggaaggttgttgatgacaacagaaagaataaaccagtcaagtgacagaatcaaggcgagtagaagaacagtgctggaaacagaggagcttggtgttacgattctccaagaattgcatcaacagcgccagtctcttctacatgccagtaacaacgtatgttttctgccttctccttttcgtatgttgcatgcggtggatgaaactattaccaacagcaagaaggttctggtagccatgacaagaaggatgagcagaaacaaatggatcatgggttccatagtaggagttctggtcctcgcaatcctgcttattctttacttgaagatatcacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

282

Amino Acids

32.29

Weight (kDa)

7.68

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	456
AciI	CCGC	3 cut(s)	46, 454, 704
AclWI	GGATC	1 cut(s)	785
AgsI	TTSAA	3 cut(s)	397, 406, 835
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	4 cut(s)	51, 281, 296, 601
AluI	AGCT	4 cut(s)	51, 281, 296, 601
Alw21I	GWGCWC	1 cut(s)	53
Alw26I	GTCTC	3 cut(s)	129, 157, 648
AlwI	GGATC	1 cut(s)	785
AoxI	GGCC	2 cut(s)	170, 495
ApeKI	GCWGC	2 cut(s)	281, 340
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	319, 805
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	319, 805
BanII	GRGCYC	2 cut(s)	30, 53
BbsI	GAAGAC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	268, 352
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	3 cut(s)	129, 157, 648
BfaI	CTAG	2 cut(s)	323, 847
BfmI	CTRYAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	640
BisI	GCNGC	2 cut(s)	282, 341
BlsI	GCNGC	2 cut(s)	283, 342
Bme18I	GGWCC	2 cut(s)	319, 805
BmgT120I	GGNCC	2 cut(s)	319, 805
BmiI	GGNNCC	1 cut(s)	787
BmsI	GCATC	2 cut(s)	75, 637
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	19, 173, 369
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 215, 245, 789, 819
Bse1I	ACTGG	3 cut(s)	547, 640, 657
BseDI	CCNNGG	3 cut(s)	19, 173, 369
BseGI	GGATG	4 cut(s)	217, 295, 715, 765
BseNI	ACTGG	3 cut(s)	547, 640, 657
BseRI	GAGGAG	7 cut(s)	128, 131, 140, 168, 236, 473, 611
BseXI	GCAGC	2 cut(s)	268, 352
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	172, 497
BsiHKAI	GWGCWC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	54
BsmAI	GTCTC	3 cut(s)	129, 157, 648
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	172, 497
Bsp1286I	GDGCHC	2 cut(s)	30, 53
Bsp143I	GATC	3 cut(s)	438, 505, 777
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	3 cut(s)	46, 454, 704
BspANI	GGCC	2 cut(s)	172, 497
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	787
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	785
BspQI	GCTCTTC	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	547, 640, 657
BssECI	CCNNGG	3 cut(s)	19, 173, 369
BssMI	GATC	3 cut(s)	438, 505, 777
BssT1I	CCWWGG	2 cut(s)	19, 369
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	6 cut(s)	80, 94, 175, 213, 401, 651
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	454, 702
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	217, 295, 715, 765
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	3 cut(s)	441, 508, 780
BstMAI	GTCTC	3 cut(s)	129, 157, 648
BstMBI	GATC	3 cut(s)	438, 505, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 256, 634
BstNSI	RCATGY	2 cut(s)	656, 704
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	268, 352
BstV2I	GAAGAC	1 cut(s)	359
BsuRI	GGCC	2 cut(s)	172, 497
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	4 cut(s)	217, 295, 715, 765
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	454, 702
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	2 cut(s)	319, 805
CseI	GACGC	1 cut(s)	367
CviAII	CATG	7 cut(s)	20, 58, 241, 653, 701, 748, 781
DpnI	GATC	3 cut(s)	440, 507, 779
DpnII	GATC	3 cut(s)	438, 505, 777
Eam1104I	CTCTTC	6 cut(s)	80, 94, 175, 213, 401, 651
EarI	CTCTTC	6 cut(s)	80, 94, 175, 213, 401, 651
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	2 cut(s)	19, 369
Eco24I	GRGCYC	2 cut(s)	30, 53
Eco32I	GATATC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	319, 805
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRV	GATATC	1 cut(s)	840
EcoT14I	CCWWGG	2 cut(s)	19, 369
EcoT38I	GRGCYC	2 cut(s)	30, 53
ErhI	CCWWGG	2 cut(s)	19, 369
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	7 cut(s)	23, 61, 244, 656, 704, 751, 784
FatI	CATG	7 cut(s)	19, 57, 240, 652, 700, 747, 780
FauI	CCCGC	1 cut(s)	461
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	282, 341
FokI	GGATG	4 cut(s)	224, 302, 722, 772
FriOI	GRGCYC	2 cut(s)	30, 53
Fsp4HI	GCNGC	2 cut(s)	282, 341
FspBI	CTAG	2 cut(s)	323, 847
GlaI	GCGC	1 cut(s)	638
GluI	GCNGC	2 cut(s)	282, 341
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	172, 497
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	639
Hin1II	CATG	7 cut(s)	23, 61, 244, 656, 704, 751, 784
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HinfI	GANTC	3 cut(s)	334, 561, 613
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	474
Hpy99I	CGWCG	2 cut(s)	35, 361
HpyAV	CCTTC	6 cut(s)	115, 143, 510, 690, 727, 750
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	5 cut(s)	66, 284, 340, 628, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 256, 634
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	7 cut(s)	23, 61, 244, 656, 704, 751, 784
HspAI	GCGC	1 cut(s)	637
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	438, 505, 777
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	4 cut(s)	48, 56, 247, 598
Lsp1109I	GCAGC	2 cut(s)	268, 352
LweI	GCATC	2 cut(s)	75, 637
MaeI	CTAG	2 cut(s)	323, 847
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	554, 607, 659
MalI	GATC	3 cut(s)	440, 507, 779
MboI	GATC	3 cut(s)	438, 505, 777
MhlI	GDGCHC	2 cut(s)	30, 53
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	90, 180
MseI	TTAA	1 cut(s)	417
MspI	CCGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	63, 256, 634
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	438, 505, 777
NlaIII	CATG	7 cut(s)	23, 61, 244, 656, 704, 751, 784
NlaIV	GGNNCC	1 cut(s)	787
NmeAIII	GCCGAG	3 cut(s)	198, 295, 369
NmuCI	GTSAC	1 cut(s)	554
NspI	RCATGY	2 cut(s)	656, 704
PaeI	GCATGC	1 cut(s)	704
PciSI	GCTCTTC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	561, 613
PkrI	GCNGC	2 cut(s)	283, 342
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	787
PspPI	GGNCC	2 cut(s)	319, 805
PstI	CTGCAG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	282, 341
Sau3AI	GATC	3 cut(s)	438, 505, 777
Sau96I	GGNCC	2 cut(s)	319, 805
SchI	GAGTC	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	30, 53
SfaNI	GCATC	2 cut(s)	75, 637
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	319, 805
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	46, 454, 704
SspMI	CTAG	2 cut(s)	323, 847
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	19, 369
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	2 cut(s)	30, 228
TasI	AATT	1 cut(s)	623
TfiI	GAWTC	2 cut(s)	561, 613
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	281, 340
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	2 cut(s)	306, 726
TspGWI	ACGGA	2 cut(s)	147, 181
TspRI	CASTG	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	319, 805
XceI	RCATGY	2 cut(s)	656, 704
XspI	CTAG	2 cut(s)	323, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.