Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001487

Physical Location & Seq

Genomic Coordinates Reverse (-)

3121318 .. 3122506

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTACGATCTGGATTCTGGAACAATGAGTGATGTATTTGAGGGGTACGAGCGCCATTACTGCGAGCTCTCTGTCAATCTCTCAAACAAATGCACACCCACCACCATTGTTGATGGAGAGCAAAGGAAGCAGAGAAATGCAGAGATAAAAGCTGCATTGGATGAAGCTGATGATTTGATTAGGAAGATGGACCTAGAGGCAAGGAGTCTGCAGCCGAGTGTGAAGACGACGCTTCTTCCCAAGGTGAGAGAATACAAAACTGATTTGAACAACTTGAAGAGCCAAGTTAAGAGAATAACAACACCAGAGATCAGTCATTTAGCCCGCGAGGAGTTGTTGGGGTCTGGAGAAGCAGATACCTTGACGGCCTCAAATGATCAAAGAGGAAGGTTGTTGATGACAACAGAAAGAATAAACCAGTCAAGTGACAGAATCAAGGCGAGTAGAAGAACAGTGCTGGAAACAGAGGAGCTTGGTGTTACGATTCTCCAAGACTTGCATCAACAACGCCAGTCTCTTCTACATTCCAGTAACAATTTGCATGCGGTGGATGAAACTATTACCAACAGTAAGAAGGTTCTGGTAGCCATGACAAGAAGGATGAGCAGAAACAAATGGATCATGGGTTCCATAGTAGGAGTTCTGGTCCTTGCAATCCTGCTTATTCTTTACTTGAAGATATCACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04130 ko04138 map04130 map04138

Pfam Domains

Protein Families

V-SNARE V-SNARE_C

Protein Analysis

229

Amino Acids

25.96

Weight (kDa)

7.8

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	9 - 99	3.8e-28	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	136 - 201	3.7e-17	Snare region anchored in the vesicle membrane C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001487)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT3G29100 AT5G39510
fragaria_vesca	FvH4_4g30760 FvH4_5g14550 FvH4_5g14550 FvH4_6g47910
malus_domestica	MD09G1055700.v1.1 MD14G1204800.v1.1 MD17G1053400.v1.1
prunus_persica	Prupe.3G263300_v2.0.a1 Prupe.5G198100_v2.0.a1
pyrus_communis	pycom111g04660 pycom14g16920 pycom17g05120
rosa_chinensis	RchiOBHm_Chr2g0167111 RchiOBHm_Chr7g0182011 RchiOBHm_Chr7g0182061
rosa_laevigata	RLG00000005160
rosa_multiflora	Rmu_co8218632.1_g000001 Rmu_co8397643.1_g000001 Rmu_sc0003511.1_g000026 Rmu_sc0003511.1_g000043 Rmu_ssc0000297.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083710 Rroxscaffold_3G00271540 Rroxscaffold_3G00271610 Rroxscaffold_3G00271620
rosa_rugosa	Rorug02G0528500 Rorug06G0445400 Rorug06G0445400
rosa_samantha	Rh2AG595600 Rh2BG606600 Rh2CG577600 Rh2DG618300 Rh4BG378600 Rh4CG392900 Rh4DG373200 Rh7AG047600 Rh7BG047700 Rh7CG047800 Rh7DG046900
rosa_wichuraiana	Rw0G000450 Rw0G007530 Rw0G011700 Rw0G019700 Rw2G049580 Rw7G003940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	327
AciI	CCGC	2 cut(s)	325, 545
AclWI	GGATC	1 cut(s)	626
AfaI	GTAC	2 cut(s)	5, 47
AgsI	TTSAA	3 cut(s)	268, 277, 676
AloI	GAACNNNNNNTCC	2 cut(s)	610, 642
AluBI	AGCT	4 cut(s)	67, 152, 167, 472
AluI	AGCT	4 cut(s)	67, 152, 167, 472
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	152, 211
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	190, 646
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	190, 646
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	139, 223
BccI	CCATC	2 cut(s)	107, 181
BceAI	ACGGC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	194, 688
BfmI	CTRYAG	1 cut(s)	209
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	2 cut(s)	153, 212
BlsI	GCNGC	2 cut(s)	154, 213
Bme18I	GGWCC	2 cut(s)	190, 646
BmgT120I	GGNCC	2 cut(s)	190, 646
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bse1I	ACTGG	3 cut(s)	418, 511, 528
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	3 cut(s)	166, 556, 606
BseNI	ACTGG	3 cut(s)	418, 511, 528
BseRI	GAGGAG	2 cut(s)	344, 482
BseXI	GCAGC	2 cut(s)	139, 223
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	7, 309, 376, 618
BspACI	CCGC	2 cut(s)	325, 545
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	628
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	418, 511, 528
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	7, 309, 376, 618
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	454, 569
Bst6I	CTCTTC	2 cut(s)	272, 522
BstC8I	GCNNGC	3 cut(s)	65, 325, 543
BstF5I	GGATG	3 cut(s)	166, 556, 606
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	10, 312, 379, 621
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	4 cut(s)	7, 309, 376, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 127
BstNSI	RCATGY	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	139, 223
BstV2I	GAAGAC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	166, 556, 606
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	3 cut(s)	65, 325, 543
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	190, 646
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	4, 46
CspCI	CAANNNNNGTGG	4 cut(s)	88, 91, 123, 126
CviAII	CATG	3 cut(s)	542, 589, 622
CviJI	RGCY	9 cut(s)	67, 152, 167, 214, 282, 323, 368, 472, 587
CviKI_1	RGCY	9 cut(s)	67, 152, 167, 214, 282, 323, 368, 472, 587
CviQI	GTAC	2 cut(s)	4, 46
DpnI	GATC	4 cut(s)	9, 311, 378, 620
DpnII	GATC	4 cut(s)	7, 309, 376, 618
Eam1104I	CTCTTC	2 cut(s)	272, 522
EarI	CTCTTC	2 cut(s)	272, 522
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	190, 646
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	545, 592, 625
FaiI	YATR	4 cut(s)	543, 590, 623, 632
FatI	CATG	3 cut(s)	541, 588, 621
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	153, 212
FokI	GGATG	3 cut(s)	173, 563, 613
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	153, 212
FspBI	CTAG	2 cut(s)	194, 688
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	153, 212
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	368
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	545, 592, 625
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	4 cut(s)	14, 205, 432, 484
HphI	GGTGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	11, 18, 345
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	381, 568, 591
HpyCH4III	ACNGT	2 cut(s)	454, 569
HpyCH4V	TGCA	7 cut(s)	93, 140, 155, 211, 499, 541, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 127
Hsp92II	CATG	3 cut(s)	545, 592, 625
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	7, 309, 376, 618
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	2 cut(s)	139, 223
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	194, 688
MaeIII	GTNAC	3 cut(s)	425, 478, 530
MalI	GATC	4 cut(s)	9, 311, 378, 620
MboI	GATC	4 cut(s)	7, 309, 376, 618
MboII	GAAGA	7 cut(s)	196, 227, 235, 289, 459, 509, 688
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	6 cut(s)	34, 190, 322, 377, 379, 460
MseI	TTAA	1 cut(s)	288
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	60, 127
NdeII	GATC	4 cut(s)	7, 309, 376, 618
NlaIII	CATG	3 cut(s)	545, 592, 625
NlaIV	GGNNCC	1 cut(s)	628
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	545
PaeI	GCATGC	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	14, 432, 484
PkrI	GCNGC	2 cut(s)	154, 213
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	190, 646
PstI	CTGCAG	1 cut(s)	213
RsaI	GTAC	2 cut(s)	5, 47
RsaNI	GTAC	2 cut(s)	4, 46
SacI	GAGCTC	1 cut(s)	69
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	153, 212
Sau3AI	GATC	4 cut(s)	7, 309, 376, 618
Sau96I	GGNCC	2 cut(s)	190, 646
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	9 cut(s)	69, 154, 169, 195, 246, 362, 392, 474, 579
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	190, 646
SphI	GCATGC	1 cut(s)	545
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	2 cut(s)	325, 545
SspMI	CTAG	2 cut(s)	194, 688
SstI	GAGCTC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	454, 569
TasI	AATT	1 cut(s)	535
TfiI	GAWTC	3 cut(s)	14, 432, 484
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	2 cut(s)	152, 211
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	177, 567
TspRI	CASTG	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	190, 646
XceI	RCATGY	1 cut(s)	545
XspI	CTAG	2 cut(s)	194, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.