Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Forward (+)

16297656 .. 16299876

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G44750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGTTCTGGGGAATTGAAGTTAAATCAGGAAAGCCAGTTACAGTGACTCCTGAAGAAGGCATTCTTATCCACGTTTCTCAGGCATCGCTTGGAGAATGTAAAAACAAGAAGGGAGAGTTTGTGCCTTTACATGTAAAGGTTGGGAACCAGAACTTGGTTCTGGGAACTCTATCGACTGAGAACATCCCTCAGCTTTTCTGTGATTTGGTATTCGACAAGGAGTTTGAGCTTTCTCACACTTGGGGAAAAGGAAGTGTTTACTTTGTTGGATACAAAACTCCCAACATTGAGCCACAAGGCTATTCTGAGGAAGAAGAGGAAGAAGAGGAAGAAGTTCCTGCTGGGAATGCTGCCAAGGCTGTAGCTAAACCAAAGGCTAAGCCTGCAGAAGTGAAGCCAGCTGTTGATGATGAAGAGGATGAGTCTGATTCTGACGGAATGGATGAAGATGATTCTGATGGTGAGGATTCTGAGGAAGAAGAGCCTACACCTAAGAAGCCTGCATCAAGCAAGAAGAGAGCTAATGAAACTACCCCTAAAGCACCTGTGTCAGCAAAGAAGGCGAAAGTAGCAGTTACTCCTCAGAAAACAGATGAGAAGAAGAAAGGGGGAAAGGCTGCAAACCAGAGCCCAAAGTCGGCCAGTCAAGTCTCATGTGGTTCATGCAAGAAGACTTTCAACTCAGGGAATGCACTTGAGTCTCACAACAAGGCCAAGCACGCTGCTGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009791 GO:0009798 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010154 GO:0010162 GO:0010431 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044764 GO:0048316 GO:0048364 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051276 GO:0051704 GO:0061458 GO:0065001 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0098732 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.37

Weight (kDa)

5.12

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	3 - 92	6e-18	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	59, 157, 640
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	20, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	5 cut(s)	196, 232, 368, 404, 524
AluI	AGCT	5 cut(s)	196, 232, 368, 404, 524
Alw26I	GTCTC	2 cut(s)	658, 708
AoxI	GGCC	2 cut(s)	642, 714
ApeKI	GCWGC	4 cut(s)	353, 620, 725, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	3 cut(s)	63, 336, 677
AsuHPI	GGTGA	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	680
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	4 cut(s)	340, 607, 712, 715
BccI	CCATC	1 cut(s)	455
BciVI	GTATCC	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	658, 708
BfmI	CTRYAG	2 cut(s)	363, 387
BfuI	GTATCC	1 cut(s)	266
BisI	GCNGC	4 cut(s)	354, 621, 726, 729
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	4 cut(s)	355, 622, 727, 730
BmiI	GGNNCC	1 cut(s)	149
BmsI	GCATC	2 cut(s)	95, 515
BpiI	GAAGAC	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	719
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	34, 64, 108, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 157, 640
Bse1I	ACTGG	2 cut(s)	38, 645
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	186, 427, 451
BseLI	CCNNNNNNNGG	3 cut(s)	59, 157, 640
BseMII	CTCAG	7 cut(s)	95, 171, 206, 300, 465, 599, 699
BseNI	ACTGG	2 cut(s)	38, 645
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	4 cut(s)	340, 607, 712, 715
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	2 cut(s)	644, 716
BslI	CCNNNNNNNGG	3 cut(s)	59, 157, 640
BsmAI	GTCTC	2 cut(s)	658, 708
BsmI	GAATGC	3 cut(s)	63, 355, 697
BsnI	GGCC	2 cut(s)	644, 716
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp1720I	GCTNAGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	644, 716
BspCNI	CTCAG	7 cut(s)	94, 172, 205, 301, 466, 598, 698
BspLI	GGNNCC	1 cut(s)	149
BspMAI	CTGCAG	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	38, 645
BssECI	CCNNGG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	5 cut(s)	312, 321, 411, 477, 512
BstC8I	GCNNGC	4 cut(s)	387, 402, 504, 723
BstDEI	CTNAG	9 cut(s)	81, 180, 192, 309, 381, 474, 495, 585, 685
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	186, 427, 451
BstMAI	GTCTC	2 cut(s)	658, 708
BstMWI	GCNNNNNNNGC	6 cut(s)	350, 359, 386, 563, 572, 722
BstNSI	RCATGY	1 cut(s)	137
BstSFI	CTRYAG	2 cut(s)	363, 387
BstV1I	GCAGC	4 cut(s)	340, 607, 712, 715
BstV2I	GAAGAC	1 cut(s)	680
BsuI	GTATCC	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	644, 716
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	186, 427, 451
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	387, 402, 504, 723
CviAII	CATG	3 cut(s)	134, 657, 666
DdeI	CTNAG	9 cut(s)	81, 180, 192, 309, 381, 474, 495, 585, 685
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	5 cut(s)	312, 321, 411, 477, 512
EarI	CTCTTC	5 cut(s)	312, 321, 411, 477, 512
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	137, 660, 669
FaiI	YATR	3 cut(s)	135, 658, 667
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	3 cut(s)	133, 656, 665
Fnu4HI	GCNGC	4 cut(s)	354, 621, 726, 729
FokI	GGATG	3 cut(s)	173, 434, 458
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	4 cut(s)	354, 621, 726, 729
GluI	GCNGC	4 cut(s)	354, 621, 726, 729
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	644, 716
Hin1II	CATG	3 cut(s)	137, 660, 669
HinfI	GANTC	6 cut(s)	49, 425, 431, 455, 470, 701
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	6 cut(s)	310, 430, 436, 460, 475, 588
Hpy188III	TCNNGA	2 cut(s)	30, 53
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	53, 106, 556
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	389, 506, 623, 669, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	350, 359, 386, 563, 572, 722
HpyF3I	CTNAG	9 cut(s)	81, 180, 192, 309, 381, 474, 495, 585, 685
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	137, 660, 669
LguI	GCTCTTC	1 cut(s)	477
Lsp1109I	GCAGC	4 cut(s)	340, 607, 712, 715
LweI	GCATC	2 cut(s)	95, 515
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	40, 46, 577
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	1 cut(s)	15
MlyI	GAGTC	3 cut(s)	43, 434, 710
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	201, 304, 313, 322, 412, 460, 469, 594
MroXI	GAANNNNTTC	3 cut(s)	63, 336, 677
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	404
Mva1269I	GAATGC	3 cut(s)	63, 355, 697
MwoI	GCNNNNNNNGC	6 cut(s)	350, 359, 386, 563, 572, 722
NlaIII	CATG	3 cut(s)	137, 660, 669
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	137
PciI	ACATGT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	477
PctI	GAATGC	3 cut(s)	63, 355, 697
PdmI	GAANNNNTTC	3 cut(s)	63, 336, 677
PfeI	GAWTC	3 cut(s)	431, 455, 470
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	355, 622, 727, 730
PleI	GAGTC	3 cut(s)	43, 433, 709
PpsI	GAGTC	3 cut(s)	43, 433, 709
PscI	ACATGT	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	149
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	354, 621, 726, 729
SchI	GAGTC	3 cut(s)	43, 434, 710
SduI	GDGCHC	1 cut(s)	635
SetI	ASST	9 cut(s)	78, 144, 198, 234, 370, 406, 496, 526, 550
SfaNI	GCATC	2 cut(s)	95, 515
SfcI	CTRYAG	2 cut(s)	363, 387
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	176, 216
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	3 cut(s)	431, 455, 470
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	4 cut(s)	353, 620, 725, 728
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	429, 462, 543, 654
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	57
XceI	RCATGY	1 cut(s)	137
XmnI	GAANNNNTTC	3 cut(s)	63, 336, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.