Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

15065356 .. 15067627

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1156500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGGAGGACCAATCTGGTAAATTCAGAAGAGGATCTCCCACTGAATTTTACCGACAATGGTAAAGTTGTTGCAGCAAAGCCAGCTCCACCCAAGACTAATGCTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAATATTGTAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGATATTGGTGATTCTGATGATGATGATGACGATAGAAGTTCTGATGAGGACATGCTTGGAGCTGATAGCAGTGATGAAGATGATGATGACAGTGAGGAAGAAGAGGAGACCCCAACTCCTAAGAAGAACTCCAAGAAAAGGCCCAATGAATCTACTCCAAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGATGGAAAGAAGGGTGCCCACACTGCTACACCACACCCTGCAAAGAAGGGAGGAAAGACTCCTGCTACCTCTGACAAGTCCAAGCCACAAACACCCAAGTCTGCTGGCGGCGATCACTCTTGCAAGCCATGCAACAAGTCATTTAACTCGGATGGTGCTCTTTCGTCTCACAAGAAGGCCAAGCACGGCGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

21.02

Weight (kDa)

5.33

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	2 cut(s)	22, 46
AfiI	CCNNNNNNNGG	1 cut(s)	324
AluBI	AGCT	2 cut(s)	86, 248
AluI	AGCT	2 cut(s)	86, 248
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	287, 361, 567
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	326, 573
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	22, 46
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	2 cut(s)	9, 327
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	392, 542
BcoDI	GTCTC	3 cut(s)	287, 361, 567
BfoI	RGCGCY	1 cut(s)	588
BisI	GCNGC	2 cut(s)	75, 505
BlsI	GCNGC	2 cut(s)	76, 506
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	9, 327
BmiI	GGNNCC	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	398
BsaI	GGTCTC	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
BseGI	GGATG	3 cut(s)	166, 172, 553
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	19, 305
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	328, 575
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	3 cut(s)	287, 361, 567
BsmBI	CGTCTC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	328, 575
Bso31I	GGTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	415, 556
Bsp143I	GATC	2 cut(s)	34, 508
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	2 cut(s)	328, 575
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	287
BssMI	GATC	2 cut(s)	34, 508
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	24, 282
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	84, 502, 521
BstDEI	CTNAG	4 cut(s)	181, 306, 363, 588
BstF5I	GGATG	3 cut(s)	166, 172, 553
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	2 cut(s)	37, 511
BstMAI	GTCTC	3 cut(s)	287, 361, 567
BstMBI	GATC	2 cut(s)	34, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 368, 419, 525
BstNSI	RCATGY	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	328, 575
BtsCI	GGATG	3 cut(s)	166, 172, 553
BtsI	GCAGTG	2 cut(s)	262, 417
BtsIMutI	CAGTG	4 cut(s)	41, 262, 283, 417
Cac8I	GCNNGC	3 cut(s)	84, 502, 521
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	2 cut(s)	9, 327
CviAII	CATG	2 cut(s)	238, 525
CviJI	RGCY	8 cut(s)	82, 86, 151, 248, 328, 481, 523, 575
CviKI_1	RGCY	8 cut(s)	82, 86, 151, 248, 328, 481, 523, 575
DdeI	CTNAG	4 cut(s)	181, 306, 363, 588
DpnI	GATC	2 cut(s)	36, 510
DpnII	GATC	2 cut(s)	34, 508
Eam1104I	CTCTTC	2 cut(s)	24, 282
EarI	CTCTTC	2 cut(s)	24, 282
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	2 cut(s)	241, 528
FaiI	YATR	2 cut(s)	239, 526
FatI	CATG	2 cut(s)	237, 524
Fnu4HI	GCNGC	2 cut(s)	75, 505
FokI	GGATG	3 cut(s)	173, 179, 560
Fsp4HI	GCNGC	2 cut(s)	75, 505
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	2 cut(s)	75, 505
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	328, 575
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	2 cut(s)	241, 528
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HinfI	GANTC	6 cut(s)	116, 170, 179, 197, 335, 454
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	7 cut(s)	28, 175, 184, 202, 229, 469, 547
Hpy188III	TCNNGA	1 cut(s)	123
HpyAV	CCTTC	5 cut(s)	127, 361, 400, 436, 565
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	4 cut(s)	74, 437, 519, 528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 368, 419, 525
HpyF3I	CTNAG	4 cut(s)	181, 306, 363, 588
Hsp92II	CATG	2 cut(s)	241, 528
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	2 cut(s)	34, 508
LmnI	GCTCC	2 cut(s)	91, 245
LpnPI	CCDG	8 cut(s)	2, 96, 108, 126, 366, 447, 471, 486
Lsp1109I	GCAGC	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	2 cut(s)	36, 510
MboI	GATC	2 cut(s)	34, 508
MboII	GAAGA	7 cut(s)	41, 111, 275, 296, 299, 322, 403
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	415, 556
MluCI	AATT	3 cut(s)	22, 46, 153
MlyI	GAGTC	2 cut(s)	173, 448
MnlI	CCTC	7 cut(s)	25, 157, 226, 274, 283, 440, 475
MseI	TTAA	3 cut(s)	138, 156, 540
MwoI	GCNNNNNNNGC	4 cut(s)	83, 368, 419, 525
NdeII	GATC	2 cut(s)	34, 508
NlaIII	CATG	2 cut(s)	241, 528
NlaIV	GGNNCC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	241
PfeI	GAWTC	4 cut(s)	116, 170, 197, 335
PkrI	GCNGC	2 cut(s)	76, 506
PleI	GAGTC	2 cut(s)	173, 448
PpsI	GAGTC	2 cut(s)	173, 448
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	9, 327
PsuI	RGATCY	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	138, 156, 540
SatI	GCNGC	2 cut(s)	75, 505
Sau3AI	GATC	2 cut(s)	34, 508
Sau96I	GGNCC	2 cut(s)	9, 327
SchI	GAGTC	2 cut(s)	173, 448
SduI	GDGCHC	2 cut(s)	415, 556
SetI	ASST	4 cut(s)	88, 138, 250, 467
SinI	GGWCC	1 cut(s)	9
Sse9I	AATT	3 cut(s)	22, 46, 153
SsiI	CCGC	1 cut(s)	504
SspI	AATATT	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	278
TasI	AATT	3 cut(s)	22, 46, 153
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	4 cut(s)	116, 170, 197, 335
Tru1I	TTAA	3 cut(s)	138, 156, 540
Tru9I	TTAA	3 cut(s)	138, 156, 540
TscAI	CASTG	4 cut(s)	48, 262, 283, 424
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	276, 348
TspRI	CASTG	4 cut(s)	48, 262, 283, 424
VpaK11BI	GGWCC	1 cut(s)	9
XapI	RAATTY	2 cut(s)	22, 46
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.