Rorug05G0292300

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002189
Physical Location & Seq
Forward (+)
33742217 .. 33743259
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0292300.1

Sequence Viewer

Length: 627 bp
ATGTTTTTATTTGCAGAGATTGTACATGTGTTCAATCCTTGTGAGAGGGACTGTGGCTTCAAATCATTAGTTCCTCTAAGTCAATTTTATGACCATGGTAATGGGTACATTGTGAATGACATATGTATAATTGAAGCAAAGGTTTCGCTGTGTAAACCTGATGCTAAGATCTTACAAGACCATGGAATTTCTGCACCTGTGGAGCCCTTCAAGAAGGGAAAAGAGAGGCAGGGACCTTCAAATGTGCAGCCTGAATCTGAGGTTGTGTCCTCTACATCAGCTGATGAGCTCATGGATTTCAGGGGTTTAGCCAAAATACAAAAAGCTTTTGTTCCGCTGTTAGATGAAGTTTGTTCATGTCACTCTTCTCTCATTGAATGCCAAATGAAGCAAAGTCCCACGTTTATCGAGTGGGCATTCACAGCCTTGGGCCGAGTTCTACATTTTTTGAAAACTAAAAAGGTTAAGGATATGACAGATGATGTCTGTGCAGACCTAGAACTTCTATGGAAAGAGCTCCAGATCTTCAAATTTGACTTGGCTTGGCTGAAGCCTCATGTTCAAAGAGCTTTGCGTGTGAATAAGTTGGTCAAAAGGGCAGGACTACTTGAGAAAGGATGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.47

Weight (kDa)

6.98

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 11 - 48 2.8e-06 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AcsI RAATTY 2 cut(s) 186, 530
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 2 cut(s) 24, 107
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 9 cut(s) 34, 61, 134, 211, 240, 377, 451, 529, 563
AluBI AGCT 5 cut(s) 281, 289, 326, 517, 569
AluI AGCT 5 cut(s) 281, 289, 326, 517, 569
Alw21I GWGCWC 2 cut(s) 291, 519
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 2 cut(s) 186, 530
AspS9I GGNCC 2 cut(s) 233, 430
AvaII GGWCC 1 cut(s) 233
BanII GRGCYC 3 cut(s) 207, 291, 519
Bbv12I GWGCWC 2 cut(s) 291, 519
BbvI GCAGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BfaI CTAG 1 cut(s) 497
BglII AGATCT 2 cut(s) 168, 522
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 233, 430
BmiI GGNNCC 2 cut(s) 204, 234
BmsI GCATC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 94, 181, 426
BseDI CCNNGG 3 cut(s) 94, 181, 426
BseGI GGATG 1 cut(s) 623
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 3 cut(s) 177, 266, 510
BshFI GGCC 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 291, 519
BslFI GGGAC 3 cut(s) 62, 246, 381
BsmFI GGGAC 3 cut(s) 62, 246, 381
BsmI GAATGC 2 cut(s) 383, 416
BsnI GGCC 1 cut(s) 432
Bsp1286I GDGCHC 3 cut(s) 207, 291, 519
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 168, 522
Bsp19I CCATGG 2 cut(s) 94, 181
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 204, 234
BsrGI TGTACA 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 94, 181, 426
BssMI GATC 2 cut(s) 168, 522
BssT1I CCWWGG 3 cut(s) 94, 181, 426
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 370
BstAUI TGTACA 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 77, 165, 258
BstDSI CCRYGG 2 cut(s) 94, 181
BstF5I GGATG 1 cut(s) 623
BstKTI GATC 2 cut(s) 171, 525
BstMBI GATC 2 cut(s) 168, 522
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 259
BstX2I RGATCY 2 cut(s) 168, 522
BstXI CCANNNNNNTGG 1 cut(s) 101
BstYI RGATCY 2 cut(s) 168, 522
BsuRI GGCC 1 cut(s) 432
BtgI CCRYGG 2 cut(s) 94, 181
BtsCI GGATG 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 233, 430
Csp6I GTAC 2 cut(s) 23, 106
CviAII CATG 6 cut(s) 26, 95, 182, 292, 357, 557
CviQI GTAC 2 cut(s) 23, 106
DdeI CTNAG 3 cut(s) 77, 165, 258
DpnI GATC 2 cut(s) 170, 524
DpnII GATC 2 cut(s) 168, 522
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Ecl136II GAGCTC 2 cut(s) 289, 517
Eco130I CCWWGG 3 cut(s) 94, 181, 426
Eco24I GRGCYC 3 cut(s) 207, 291, 519
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 2 cut(s) 289, 517
Eco57I CTGAAG 1 cut(s) 569
EcoICRI GAGCTC 2 cut(s) 289, 517
EcoO109I RGGNCCY 1 cut(s) 233
EcoT14I CCWWGG 3 cut(s) 94, 181, 426
EcoT38I GRGCYC 3 cut(s) 207, 291, 519
ErhI CCWWGG 3 cut(s) 94, 181, 426
FaeI CATG 6 cut(s) 29, 98, 185, 295, 360, 560
FaqI GGGAC 3 cut(s) 62, 246, 381
FatI CATG 6 cut(s) 25, 94, 181, 291, 356, 556
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 248
FriOI GRGCYC 3 cut(s) 207, 291, 519
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 1 cut(s) 497
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 503
HaeIII GGCC 1 cut(s) 432
Hin1II CATG 6 cut(s) 29, 98, 185, 295, 360, 560
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 211, 520
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 208, 217, 246
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 4 cut(s) 14, 194, 247, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 3 cut(s) 77, 165, 258
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 6 cut(s) 29, 98, 185, 295, 360, 560
Kzo9I GATC 2 cut(s) 168, 522
LmnI GCTCC 2 cut(s) 202, 522
LpnPI CCDG 7 cut(s) 171, 210, 215, 264, 286, 533, 585
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 497
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 170, 524
MboI GATC 2 cut(s) 168, 522
MboII GAAGA 2 cut(s) 357, 517
MflI RGATCY 2 cut(s) 168, 522
MhlI GDGCHC 3 cut(s) 207, 291, 519
MluCI AATT 4 cut(s) 83, 129, 186, 530
MnlI CCTC 6 cut(s) 39, 84, 219, 253, 280, 564
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 281, 337
Mva1269I GAATGC 2 cut(s) 383, 416
MwoI GCNNNNNNNGC 1 cut(s) 422
NcoI CCATGG 2 cut(s) 94, 181
NdeI CATATG 1 cut(s) 122
NdeII GATC 2 cut(s) 168, 522
NlaIII CATG 6 cut(s) 29, 98, 185, 295, 360, 560
NlaIV GGNNCC 2 cut(s) 204, 234
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 29
PciI ACATGT 1 cut(s) 25
PctI GAATGC 2 cut(s) 383, 416
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 2 cut(s) 291, 519
Psp5II RGGWCCY 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 204, 234
PspPI GGNCC 2 cut(s) 233, 430
PspPPI RGGWCCY 1 cut(s) 233
PsuI RGATCY 2 cut(s) 168, 522
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 24, 107
RsaNI GTAC 2 cut(s) 23, 106
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 2 cut(s) 291, 519
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 2 cut(s) 168, 522
Sau96I GGNCC 2 cut(s) 233, 430
SduI GDGCHC 3 cut(s) 207, 291, 519
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 4 cut(s) 83, 129, 186, 530
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 497
SstI GAGCTC 2 cut(s) 291, 519
StyI CCWWGG 3 cut(s) 94, 181, 426
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 404
TaqI TCGA 1 cut(s) 408
TasI AATT 4 cut(s) 83, 129, 186, 530
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 345, 360, 401
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 2 cut(s) 186, 530
XceI RCATGY 1 cut(s) 29
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.