Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

7501479 .. 7503794

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCCTCAGATTCCCTTTGACTTGGTCTTTGACAAAGAATTCGAGCTCTCTCACAACTTGAAAAGCGGGAGTGTCCACTTTTGTGGTTATAAAACTTACATTCCGACGAGGACCAATCTGTTTGATAGTGAATCAGAAGAGGATCTCCCACTGAATTTTACTGGCAATGGTAACATTGTTGAAGCAAAGCCAGCTCCACCCAAGACTAAAGCTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAAGATTGAAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGAAGATGATTCTGATGATGATGATGAAAGTTCTGATGAGGACATGCTTGGAGCTGATAGTAGTGATGAAGATGATGAGGACAGTGAGAAAGAAGAGGACACCCCAACGCCTAAGAAGGACTCCAAGAAAAGGCCCAATGAGTCTGCCCCAAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGATGGAAAGAAGGGTGCCCACACTGCAACACCACACCCTGCAAAGAAGGGCGGAAAGACTCCACAAACACCCAATTCTGCTGGCGGCGATCACTCTTTTTGCTGCTGGTTTTTATGTATTGTGCTGCTTGTTGCAGGTCATTTAACTCTGATGGTGCTCTTTCGTCTCACAACAAGGCCAAGCACGGCGCTAAGTAGAATGAGAGGGACGTGCGGAAGCGTTGCACGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

4.96

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	4 cut(s)	66, 546, 579, 708
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	38, 154
AfiI	CCNNNNNNNGG	1 cut(s)	423
AgsI	TTSAA	3 cut(s)	61, 182, 254
AjiI	CACGTC	1 cut(s)	705
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	4 cut(s)	46, 194, 212, 347
AluI	AGCT	4 cut(s)	46, 194, 212, 347
Alw21I	GWGCWC	2 cut(s)	48, 654
Alw26I	GTCTC	2 cut(s)	460, 665
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	2 cut(s)	425, 671
ApeKI	GCWGC	2 cut(s)	597, 619
ApoI	RAATTY	2 cut(s)	38, 154
ArsI	GACNNNNNNTTYG	4 cut(s)	11, 23, 43, 55
AspLEI	GCGC	1 cut(s)	685
AspS9I	GGNCC	2 cut(s)	111, 426
AvaII	GGWCC	1 cut(s)	111
BaeGI	GKGCMC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	48, 654
BbvI	GCAGC	2 cut(s)	584, 606
BccI	CCATC	2 cut(s)	491, 640
BceAI	ACGGC	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	460, 665
BfoI	RGCGCY	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	3 cut(s)	580, 598, 620
BlsI	GCNGC	3 cut(s)	581, 599, 621
Bme18I	GGWCC	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	111, 426
BmiI	GGNNCC	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	274, 280
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	20, 303
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	584, 606
BshFI	GGCC	2 cut(s)	427, 673
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	48, 654
BslFI	GGGAC	1 cut(s)	715
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	460, 665
BsmBI	CGTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	2 cut(s)	427, 673
Bsp1286I	GDGCHC	3 cut(s)	48, 514, 654
Bsp143I	GATC	2 cut(s)	142, 583
BspACI	CCGC	4 cut(s)	66, 546, 579, 708
BspANI	GGCC	2 cut(s)	427, 673
BspCNI	CTCAG	2 cut(s)	19, 302
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	142, 583
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	3 cut(s)	132, 249, 381
BstC8I	GCNNGC	3 cut(s)	192, 577, 721
BstDEI	CTNAG	5 cut(s)	6, 289, 405, 462, 686
BstF5I	GGATG	2 cut(s)	274, 280
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	1 cut(s)	685
BstKTI	GATC	2 cut(s)	145, 586
BstMAI	GTCTC	2 cut(s)	460, 665
BstMBI	GATC	2 cut(s)	142, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 467, 518, 720
BstNSI	RCATGY	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	584, 606
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	427, 673
BtrI	CACGTC	1 cut(s)	705
BtsCI	GGATG	2 cut(s)	274, 280
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	3 cut(s)	149, 382, 516
BveI	ACCTGC	1 cut(s)	620
Cac8I	GCNNGC	3 cut(s)	192, 577, 721
CfoI	GCGC	1 cut(s)	685
Cfr13I	GGNCC	2 cut(s)	111, 426
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	8 cut(s)	46, 190, 194, 212, 259, 347, 427, 673
CviKI_1	RGCY	8 cut(s)	46, 190, 194, 212, 259, 347, 427, 673
DdeI	CTNAG	5 cut(s)	6, 289, 405, 462, 686
DpnI	GATC	2 cut(s)	144, 585
DpnII	GATC	2 cut(s)	142, 583
Eam1104I	CTCTTC	3 cut(s)	132, 249, 381
EarI	CTCTTC	3 cut(s)	132, 249, 381
EciI	GGCGGA	1 cut(s)	561
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoRI	GAATTC	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	665
FaeI	CATG	1 cut(s)	340
FaiI	YATR	4 cut(s)	90, 338, 610, 727
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	580, 598, 620
FokI	GGATG	2 cut(s)	281, 287
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	580, 598, 620
GlaI	GCGC	1 cut(s)	684
GluI	GCNGC	3 cut(s)	580, 598, 620
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	2 cut(s)	427, 673
HhaI	GCGC	1 cut(s)	685
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	683
HinP1I	GCGC	1 cut(s)	683
HinfI	GANTC	9 cut(s)	10, 131, 224, 278, 287, 302, 413, 434, 553
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	8 cut(s)	9, 105, 136, 283, 292, 307, 328, 645
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	5 cut(s)	235, 403, 460, 499, 535
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	4 cut(s)	521, 536, 629, 719
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 467, 518, 720
HpyF3I	CTNAG	5 cut(s)	6, 289, 405, 462, 686
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	683
Kzo9I	GATC	2 cut(s)	142, 583
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	199, 344
LpnPI	CCDG	9 cut(s)	147, 204, 216, 234, 465, 546, 561, 586, 615
Lsp1109I	GCAGC	2 cut(s)	584, 606
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	2 cut(s)	170, 478
MalI	GATC	2 cut(s)	144, 585
MboI	GATC	2 cut(s)	142, 583
MboII	GAAGA	7 cut(s)	149, 219, 266, 308, 374, 398, 502
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	3 cut(s)	48, 514, 654
MluCI	AATT	4 cut(s)	38, 154, 261, 568
MlyI	GAGTC	4 cut(s)	281, 407, 443, 547
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	8 cut(s)	15, 102, 133, 265, 325, 364, 382, 692
MseI	TTAA	3 cut(s)	246, 264, 638
MslI	CAYNNNNRTG	2 cut(s)	81, 724
MwoI	GCNNNNNNNGC	4 cut(s)	191, 467, 518, 720
NdeII	GATC	2 cut(s)	142, 583
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	1 cut(s)	511
NspI	RCATGY	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	5 cut(s)	10, 131, 224, 278, 302
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	581, 599, 621
PleI	GAGTC	4 cut(s)	281, 407, 442, 547
PpsI	GAGTC	4 cut(s)	281, 407, 442, 547
PsiI	TTATAA	1 cut(s)	90
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	2 cut(s)	111, 426
PsuI	RGATCY	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	23
RseI	CAYNNNNRTG	2 cut(s)	81, 724
SacI	GAGCTC	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	246, 264, 638
SatI	GCNGC	3 cut(s)	580, 598, 620
Sau3AI	GATC	2 cut(s)	142, 583
Sau96I	GGNCC	2 cut(s)	111, 426
SchI	GAGTC	4 cut(s)	281, 407, 443, 547
SduI	GDGCHC	3 cut(s)	48, 514, 654
SetI	ASST	7 cut(s)	48, 196, 214, 246, 349, 634, 707
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	81, 724
Sse9I	AATT	4 cut(s)	38, 154, 261, 568
SsiI	CCGC	4 cut(s)	66, 546, 579, 708
SstI	GAGCTC	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	38, 154, 261, 568
TauI	GCSGC	1 cut(s)	582
TfiI	GAWTC	5 cut(s)	10, 131, 224, 278, 302
Tru1I	TTAA	3 cut(s)	246, 264, 638
Tru9I	TTAA	3 cut(s)	246, 264, 638
TscAI	CASTG	3 cut(s)	156, 382, 523
TseI	GCWGC	2 cut(s)	597, 619
TspDTI	ATGAA	3 cut(s)	309, 333, 375
TspRI	CASTG	3 cut(s)	156, 382, 523
Tth111I	GACNNNGTC	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	38, 154
XceI	RCATGY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.