Rh5BG373700

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002189
Physical Location & Seq
Forward (+)
58849215 .. 58852461
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG373700.1

Sequence Viewer

Length: 900 bp
ATGGAGTTCTGGGGTGTTGAAGTGAAGGCTGGAGAGCCGCTGAGTGTGGTGCCAGACCAAGGCAATGTGGTGCATTTGTCACAGGCTTGTCTAGGTGAGTCAAAGAAGGCAGCTGACAGCGTTGTTATCTATGGAAAGACTGCAGAGAAGAAGCTTGTGTTGGGACATCTCATTCCTGGCCAAATCCCTCAGTTGTCATTTGATTTGGTCTTTGATGATGAGTTTGAGCTATCCCACAACTGGAAAAGTGGTAGCGTCCACTTTGCTGGTTATCAATCCGTAATGGGTGATGAGGAATCGGGTGATGAGTTTGAATCAGAGTCTTCTGAAGAGGAGGAAGAACTCCCAATGATTGCTGCAGAGAATGGAAAAGTTGAAAATGCAAAACCAGCTATAGCGAAGAGCAATGCTGTCAAACCTGAATCTTCTGGAAAGCAAAAGGTTAAGATTGAAGAACCAATCAAAGTTGAGGCTGATGAAGATGATTCTGCTTCTGACATGGATGACTCAGATGACTTATTGGATGAAGATGACTCATCAGATGATGATGATGATGAAAGTGAGGATGATTCTGATGAGGAAGATGAAGAGACACCTACTCCTAAGAAGCCTGAATCTAAGAAAAGAGCCCAGGTCTCTGGATCAGTCAAAACTCCAGTTTCTGCTAAGAAGGCAAAGATAGTCACCAGTACTCCTCAGAAGACTGATGGTAAGAAGGGCGGCCACACAGATACTCCACACCCTGCAAAGAAGGGAAAGACTCCTGCTACCGATAAATCCAAGACACAAACTCCAAAGTCTGCTGGTGGCAATTTCTCCTGCGGTTCCTGCAGCAAGTCATTTGGTTCAGATGGTGCTCTTCAGTCTCACAACAAGGCTAAGCATAGTGCTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

31.93

Weight (kDa)

4.66

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 91 6.5e-18 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 49
AciI CCGC 3 cut(s) 38, 720, 822
AclWI GGATC 1 cut(s) 649
AcoI YGGCCR 2 cut(s) 178, 721
AcuI CTGAAG 2 cut(s) 348, 845
AfaI GTAC 1 cut(s) 691
AfiI CCNNNNNNNGG 2 cut(s) 59, 240
AgsI TTSAA 4 cut(s) 20, 314, 377, 452
AjnI CCWGG 2 cut(s) 175, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 4 cut(s) 113, 154, 229, 392
AluI AGCT 4 cut(s) 113, 154, 229, 392
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 584, 640, 870
AlwI GGATC 1 cut(s) 649
AlwNI CAGNNNCTG 1 cut(s) 662
AoxI GGCC 2 cut(s) 178, 721
ApeKI GCWGC 3 cut(s) 110, 356, 831
AsuHPI GGTGA 4 cut(s) 107, 299, 314, 676
BalI TGGCCA 1 cut(s) 180
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 631
BbsI GAAGAC 2 cut(s) 315, 707
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 3 cut(s) 122, 343, 843
BccI CCATC 2 cut(s) 701, 845
BciT130I CCWGG 2 cut(s) 177, 632
BcoDI GTCTC 3 cut(s) 584, 640, 870
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 4 cut(s) 141, 357, 393, 829
BisI GCNGC 5 cut(s) 38, 111, 357, 721, 832
BlpI GCTNAGC 1 cut(s) 879
BlsI GCNGC 5 cut(s) 39, 112, 358, 722, 833
BmcAI AGTACT 1 cut(s) 691
Bme1390I CCNGG 2 cut(s) 177, 632
BmiI GGNNCC 2 cut(s) 51, 826
BmrFI CCNGG 2 cut(s) 177, 632
BpiI GAAGAC 2 cut(s) 315, 707
BpmI CTGGAG 2 cut(s) 51, 639
Bpu1102I GCTNAGC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 58, 630
BsaXI ACNNNNNCTCC 8 cut(s) 583, 613, 676, 706, 718, 748, 775, 805
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 240
Bse1I ACTGG 3 cut(s) 245, 656, 687
Bse3DI GCAATG 2 cut(s) 70, 412
BseBI CCWGG 2 cut(s) 177, 632
BseDI CCNNGG 2 cut(s) 58, 630
BseGI GGATG 3 cut(s) 508, 529, 571
BseLI CCNNNNNNNGG 2 cut(s) 59, 240
BseMI GCAATG 2 cut(s) 70, 412
BseMII CTCAG 4 cut(s) 32, 203, 522, 710
BseNI ACTGG 3 cut(s) 245, 656, 687
BseRI GAGGAG 2 cut(s) 347, 684
BseXI GCAGC 3 cut(s) 122, 343, 843
BshFI GGCC 2 cut(s) 180, 723
BshNI GGYRCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 859
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 59, 240
BsmAI GTCTC 3 cut(s) 584, 640, 870
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 2 cut(s) 180, 723
Bso31I GGTCTC 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 631, 859
Bsp143I GATC 1 cut(s) 641
Bsp1720I GCTNAGC 1 cut(s) 879
BspACI CCGC 3 cut(s) 38, 720, 822
BspANI GGCC 2 cut(s) 180, 723
BspCNI CTCAG 4 cut(s) 33, 202, 521, 709
BspLI GGNNCC 2 cut(s) 51, 826
BspMAI CTGCAG 3 cut(s) 145, 361, 833
BspPI GGATC 1 cut(s) 649
BspQI GCTCTTC 2 cut(s) 395, 864
BspT107I GGYRCC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 640
BsrDI GCAATG 2 cut(s) 70, 412
BsrI ACTGG 3 cut(s) 245, 656, 687
BssECI CCNNGG 2 cut(s) 58, 630
BssMI GATC 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 177, 632
Bst6I CTCTTC 4 cut(s) 324, 395, 582, 864
BstDEI CTNAG 8 cut(s) 41, 189, 508, 603, 618, 666, 696, 879
BstF5I GGATG 3 cut(s) 508, 529, 571
BstKTI GATC 1 cut(s) 644
BstMAI GTCTC 3 cut(s) 584, 640, 870
BstMBI GATC 1 cut(s) 641
BstMWI GCNNNNNNNGC 3 cut(s) 389, 671, 828
BstNI CCWGG 2 cut(s) 177, 632
BstSCI CCNGG 2 cut(s) 175, 630
BstSFI CTRYAG 4 cut(s) 141, 357, 393, 829
BstV1I GCAGC 3 cut(s) 122, 343, 843
BstV2I GAAGAC 2 cut(s) 315, 707
BstXI CCANNNNNNTGG 2 cut(s) 266, 638
BsuRI GGCC 2 cut(s) 180, 723
BtsCI GGATG 3 cut(s) 508, 529, 571
CaiI CAGNNNCTG 1 cut(s) 662
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 690
CviAII CATG 1 cut(s) 499
CviQI GTAC 1 cut(s) 690
DdeI CTNAG 8 cut(s) 41, 189, 508, 603, 618, 666, 696, 879
DpnI GATC 1 cut(s) 643
DpnII GATC 1 cut(s) 641
EaeI YGGCCR 2 cut(s) 178, 721
Eam1104I CTCTTC 4 cut(s) 324, 395, 582, 864
EarI CTCTTC 4 cut(s) 324, 395, 582, 864
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 640
Eco57I CTGAAG 2 cut(s) 348, 845
EcoRII CCWGG 2 cut(s) 175, 630
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 502
FaiI YATR 4 cut(s) 132, 395, 500, 885
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 38, 111, 357, 721, 832
FokI GGATG 3 cut(s) 515, 536, 578
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 5 cut(s) 38, 111, 357, 721, 832
FspBI CTAG 1 cut(s) 92
GluI GCNGC 5 cut(s) 38, 111, 357, 721, 832
GsuI CTGGAG 2 cut(s) 51, 639
HaeIII GGCC 2 cut(s) 180, 723
HgaI GACGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 152
HphI GGTGA 4 cut(s) 107, 299, 314, 676
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 8 cut(s) 319, 328, 496, 511, 541, 574, 699, 850
Hpy188III TCNNGA 2 cut(s) 429, 639
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 5 cut(s) 19, 100, 664, 709, 745
HpyCH4V TGCA 6 cut(s) 73, 143, 359, 383, 746, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 671, 828
HpyF3I CTNAG 8 cut(s) 41, 189, 508, 603, 618, 666, 696, 879
Hsp92II CATG 1 cut(s) 502
Kzo9I GATC 1 cut(s) 641
LguI GCTCTTC 2 cut(s) 395, 864
Lsp1109I GCAGC 3 cut(s) 122, 343, 843
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 78, 682
MalI GATC 1 cut(s) 643
MboI GATC 1 cut(s) 641
MhlI GDGCHC 2 cut(s) 631, 859
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 1 cut(s) 811
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 5 cut(s) 107, 329, 500, 527, 754
MnlI CCTC 8 cut(s) 198, 286, 325, 328, 463, 556, 571, 705
Mox20I TGGCCA 1 cut(s) 180
MscI TGGCCA 1 cut(s) 180
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 180
MspA1I CMGCKG 2 cut(s) 40, 113
MspR9I CCNGG 2 cut(s) 177, 632
MvaI CCWGG 2 cut(s) 177, 632
MwoI GCNNNNNNNGC 3 cut(s) 389, 671, 828
NdeII GATC 1 cut(s) 641
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 2 cut(s) 51, 826
NmuCI GTSAC 2 cut(s) 78, 682
PciSI GCTCTTC 2 cut(s) 395, 864
PfeI GAWTC 6 cut(s) 296, 314, 422, 485, 569, 614
PkrI GCNGC 5 cut(s) 39, 112, 358, 722, 833
PleI GAGTC 5 cut(s) 106, 328, 500, 527, 754
PpsI GAGTC 5 cut(s) 106, 328, 500, 527, 754
Psp6I CCWGG 2 cut(s) 175, 630
PspGI CCWGG 2 cut(s) 175, 630
PspN4I GGNNCC 2 cut(s) 51, 826
PstI CTGCAG 3 cut(s) 145, 361, 833
PstNI CAGNNNCTG 1 cut(s) 662
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 691
RsaNI GTAC 1 cut(s) 690
SapI GCTCTTC 2 cut(s) 395, 864
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 5 cut(s) 38, 111, 357, 721, 832
Sau3AI GATC 1 cut(s) 641
ScaI AGTACT 1 cut(s) 691
SchI GAGTC 5 cut(s) 107, 329, 500, 527, 754
ScrFI CCNGG 2 cut(s) 177, 632
SduI GDGCHC 2 cut(s) 631, 859
SetI ASST 9 cut(s) 97, 115, 156, 231, 394, 421, 444, 598, 636
SfcI CTRYAG 4 cut(s) 141, 357, 393, 829
Sse9I AATT 1 cut(s) 811
SsiI CCGC 3 cut(s) 38, 720, 822
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 175, 630
StyI CCWWGG 1 cut(s) 58
TasI AATT 1 cut(s) 811
TatI WGTACW 1 cut(s) 689
TauI GCSGC 2 cut(s) 40, 723
TfiI GAWTC 6 cut(s) 296, 314, 422, 485, 569, 614
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TseFI GTSAC 2 cut(s) 78, 682
TseI GCWGC 3 cut(s) 110, 356, 831
Tsp45I GTSAC 2 cut(s) 78, 682
TspDTI ATGAA 4 cut(s) 492, 540, 570, 600
TspGWI ACGGA 1 cut(s) 268
XspI CTAG 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.