Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Forward (+)

59982798 .. 59984031

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG387400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTATTATTTATTATTCTTTCTCCTTGTTGTAGAGTTTGAATCAGAGTCAGAAGAAGAGGAGGAAGAACTCCCAATGATTGCTGCAGAGAATGGAAAAGTTGAAAATGCAAAACCAGCTATAGCCAAGAGCAATGCTGTCAAACCTGAATCTTCTGGAAAGCAAAAGGTTAAGATTGAAGAACCAATCAAAGTTGTGGCTGATGAAGATGATTCCGCTTCTGACATGGATGACTCAGATGACTTATTGGATGAAGATGACTCATCACCTGAATCTAAGAAAAGAGCCCAGGTCTCTGGATCAGTCAAAACTCCAGTTTCTGCTAAGAAGGCAAAGATAGTCACCAGTACTCCTCAGAAGACTGATGGTAAGAAGGGCGGCCACACAGATACTCCACACCCTGCAAAGAAGGGGAAGACTCCTGCTACTGATAAATCCAAGACACAAACTCCAAAATCTGCTGGTGGCAATTTCTCCTGCGGTTCCTGCAGCAAGTCATTTGGTTCAGATGGTGCTCTTCAGTCTCACAACAAGGCTAAGCATAGTGCTGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

19.66

Weight (kDa)

5.66

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	216, 378, 480
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	349
AgsI	TTSAA	3 cut(s)	41, 104, 179
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	298, 528
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	83, 489
AsuHPI	GGTGA	2 cut(s)	258, 334
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	2 cut(s)	365, 422
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	2 cut(s)	70, 501
BccI	CCATC	2 cut(s)	359, 503
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	298, 528
BfmI	CTRYAG	3 cut(s)	84, 120, 487
BisI	GCNGC	3 cut(s)	84, 379, 490
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	3 cut(s)	85, 380, 491
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	2 cut(s)	365, 422
BpmI	CTGGAG	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	6 cut(s)	334, 364, 376, 406, 433, 463
Bse1I	ACTGG	2 cut(s)	314, 345
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	235, 256
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	249, 368
BseNI	ACTGG	2 cut(s)	314, 345
BseRI	GAGGAG	2 cut(s)	74, 342
BseXI	GCAGC	2 cut(s)	70, 501
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	517
BsmAI	GTCTC	2 cut(s)	298, 528
BsnI	GGCC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	289, 517
Bsp143I	GATC	1 cut(s)	299
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	3 cut(s)	216, 378, 480
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	2 cut(s)	248, 367
BspLI	GGNNCC	1 cut(s)	484
BspMAI	CTGCAG	2 cut(s)	88, 491
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	522
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	314, 345
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	290
Bst6I	CTCTTC	2 cut(s)	51, 522
BstDEI	CTNAG	5 cut(s)	235, 276, 324, 354, 537
BstF5I	GGATG	2 cut(s)	235, 256
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	2 cut(s)	298, 528
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 329, 486
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	3 cut(s)	84, 120, 487
BstV1I	GCAGC	2 cut(s)	70, 501
BstV2I	GAAGAC	2 cut(s)	365, 422
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	235, 256
CaiI	CAGNNNCTG	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	6 cut(s)	119, 125, 200, 287, 381, 536
CviKI_1	RGCY	6 cut(s)	119, 125, 200, 287, 381, 536
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	5 cut(s)	235, 276, 324, 354, 537
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	51, 522
EarI	CTCTTC	2 cut(s)	51, 522
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	1 cut(s)	229
FaiI	YATR	3 cut(s)	122, 227, 543
FatI	CATG	1 cut(s)	225
Fnu4HI	GCNGC	3 cut(s)	84, 379, 490
FokI	GGATG	2 cut(s)	242, 263
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	3 cut(s)	84, 379, 490
GluI	GCNGC	3 cut(s)	84, 379, 490
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	8 cut(s)	41, 47, 149, 212, 233, 260, 272, 418
HphI	GGTGA	2 cut(s)	258, 334
Hpy188I	TCNGA	6 cut(s)	46, 52, 223, 238, 357, 508
Hpy188III	TCNNGA	2 cut(s)	156, 297
HpyAV	CCTTC	3 cut(s)	322, 367, 403
HpyCH4V	TGCA	4 cut(s)	86, 110, 404, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 329, 486
HpyF3I	CTNAG	5 cut(s)	235, 276, 324, 354, 537
Hsp92II	CATG	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	299
LguI	GCTCTTC	1 cut(s)	522
Lsp1109I	GCAGC	2 cut(s)	70, 501
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	289, 517
MluCI	AATT	1 cut(s)	469
MlyI	GAGTC	4 cut(s)	56, 227, 254, 412
MnlI	CCTC	3 cut(s)	52, 55, 363
MseI	TTAA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	116, 329, 486
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	41, 149, 212, 272
PkrI	GCNGC	3 cut(s)	85, 380, 491
PleI	GAGTC	4 cut(s)	55, 227, 254, 412
PpsI	GAGTC	4 cut(s)	55, 227, 254, 412
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	484
PstI	CTGCAG	2 cut(s)	88, 491
PstNI	CAGNNNCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	84, 379, 490
Sau3AI	GATC	1 cut(s)	299
ScaI	AGTACT	1 cut(s)	349
SchI	GAGTC	4 cut(s)	56, 227, 254, 412
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	289, 517
SetI	ASST	5 cut(s)	121, 148, 171, 271, 294
SfcI	CTRYAG	3 cut(s)	84, 120, 487
Sse9I	AATT	1 cut(s)	469
SsiI	CCGC	3 cut(s)	216, 378, 480
StyD4I	CCNGG	1 cut(s)	288
TasI	AATT	1 cut(s)	469
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	4 cut(s)	41, 149, 212, 272
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	2 cut(s)	83, 489
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	2 cut(s)	219, 267
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.