Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

56497912 .. 56500073

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTGTGCAGATTGGGTGTTGAAGTGAAGCCTGGAGAGCCCGAGTGTAGTGCCAAACCAAGGCAATGTGGTGCCTTTGTCACAGGCGAGTCAAAGAAGGCAGCTGACAGCATTTTTATCTATGGAAAGATCAGAGAGCAGAAGCTTGTGTTGGGGCATCTCATTCCTAGCCAAATCCCACAGTTGTCATTTGATTTGGTCTTTGATGATGAGTTTGAACTATCCCACAACTGGAAAAGTGAGTTTGAATCAGAGTCAGAAGAAGAGGAGGAAGAACTCCCAGTGATTGCTGCAGAGAAAGGTGTATGTTCAGGTTTTAGATCAAGGAAGAGTTGCGGAAGGAGAGAGAAATCAATGAAGGCCTTCAAAATTGCTCATTGCTCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

5.69

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	60, 231
AgsI	TTSAA	4 cut(s)	23, 218, 248, 367
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	104, 145
AluI	AGCT	2 cut(s)	104, 145
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	101, 290
Asp700I	GAANNNNTTC	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	113, 277
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	1 cut(s)	33
BfaI	CTAG	2 cut(s)	168, 388
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	102, 291
BlsI	GCNGC	2 cut(s)	103, 292
Bme1390I	CCNGG	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 231
Bse1I	ACTGG	2 cut(s)	236, 281
Bse3DI	GCAATG	2 cut(s)	71, 376
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	60, 231
BseMI	GCAATG	2 cut(s)	71, 376
BseNI	ACTGG	2 cut(s)	236, 281
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	113, 277
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	60, 231
BsnI	GGCC	1 cut(s)	362
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	129, 320
BspACI	CCGC	1 cut(s)	336
BspANI	GGCC	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	71, 376
BsrI	ACTGG	2 cut(s)	236, 281
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	129, 320
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	183
Bst6I	CTCTTC	2 cut(s)	258, 323
BstKTI	GATC	2 cut(s)	132, 323
BstMBI	GATC	2 cut(s)	129, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	113, 277
BsuRI	GGCC	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	288
CviJI	RGCY	6 cut(s)	31, 40, 104, 145, 171, 362
CviKI_1	RGCY	6 cut(s)	31, 40, 104, 145, 171, 362
DpnI	GATC	2 cut(s)	131, 322
DpnII	GATC	2 cut(s)	129, 320
Eam1104I	CTCTTC	2 cut(s)	258, 323
EarI	CTCTTC	2 cut(s)	258, 323
Eco130I	CCWWGG	1 cut(s)	59
Eco147I	AGGCCT	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	59
FaiI	YATR	2 cut(s)	123, 307
Fnu4HI	GCNGC	2 cut(s)	102, 291
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	102, 291
FspBI	CTAG	2 cut(s)	168, 388
GluI	GCNGC	2 cut(s)	102, 291
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	3 cut(s)	89, 248, 254
Hpy188I	TCNGA	3 cut(s)	134, 253, 259
HpyAV	CCTTC	4 cut(s)	91, 333, 352, 373
HpyCH4III	ACNGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	9, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	129, 320
LpnPI	CCDG	6 cut(s)	18, 45, 69, 217, 294, 297
Lsp1109I	GCAGC	2 cut(s)	113, 277
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	2 cut(s)	168, 388
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	131, 322
MboI	GATC	2 cut(s)	129, 320
MboII	GAAGA	4 cut(s)	272, 275, 284, 340
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	98, 263
MnlI	CCTC	2 cut(s)	259, 262
MroXI	GAANNNNTTC	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	129, 320
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	362
PdmI	GAANNNNTTC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	103, 292
PleI	GAGTC	2 cut(s)	97, 262
PpsI	GAGTC	2 cut(s)	97, 262
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	104
SatI	GCNGC	2 cut(s)	102, 291
Sau3AI	GATC	2 cut(s)	129, 320
SchI	GAGTC	2 cut(s)	98, 263
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	4 cut(s)	106, 147, 304, 316
SfaNI	GCATC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	369
SseBI	AGGCCT	1 cut(s)	362
SsiI	CCGC	1 cut(s)	336
SspMI	CTAG	2 cut(s)	168, 388
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	183
TasI	AATT	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	101, 290
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	2 cut(s)	168, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.