Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

13404889 .. 13407175

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1134300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAATGTTGCAATATTTGATCTCCCCATTTGTTCCTTGACTACTTGCTGTTTCTGCTGCCACCGAATCCGACGAGGACCAATCTGTGAATCAGAAGAGGATCTCCCGCTGAATTTTACTGGCAATGGTAACATTGTTGAAGCAAAGCCAGCTCCACCCAAGACTAATACTGTCAAACCAGAATCTTCTGGAAAGCAGAAGGTTAAGATTGAAGAGCCAATTAAGGATGAGGATGATTCTGATGACTCAGATGAAGATGATTCTGATGATGATGAAAGTTCTGATGAGGACATGCTTGGAGCTGATAGTAGTGATGAAGATGATGAGGACAGTGAGGAAGAAGAGGACACCCCAACGCCTAAGAAGGACTCCAAGAAAAGGCCCAATGAATCTGCCCCGAAAACTCCTGTCTCTGCTAAGAAGGCAAAGCAAGTTACTCCACAGAAGACTGACGGAAAGAAGGGTGCCCACACTGCAACACCACACCCTGCAAAGAAGGGCGGAAAGACTCCACAAACACCTAATTCTGCTGGCGGCGATCACTCTTGCAAAACATGCAGCAAGTCATTTAACTCTGATGGCGCTCTTTCGTCTCACAACAAGGCCAAGCACGGGGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.2

Weight (kDa)

4.93

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	464
AciI	CCGC	3 cut(s)	107, 501, 534
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	2 cut(s)	378, 612
AgsI	TTSAA	2 cut(s)	140, 212
AluBI	AGCT	2 cut(s)	152, 302
AluI	AGCT	2 cut(s)	152, 302
Alw26I	GTCTC	2 cut(s)	415, 597
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	3 cut(s)	380, 603, 615
ApeKI	GCWGC	2 cut(s)	57, 558
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	3 cut(s)	77, 381, 615
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	44, 570
BccI	CCATC	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	415, 597
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	3 cut(s)	58, 535, 559
BlsI	GCNGC	3 cut(s)	59, 536, 560
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	77, 381, 615
BmiI	GGNNCC	2 cut(s)	466, 616
BpiI	GAAGAC	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 612
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	232, 238
BseLI	CCNNNNNNNGG	2 cut(s)	378, 612
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	124
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	2 cut(s)	44, 570
BshFI	GGCC	3 cut(s)	382, 605, 617
BshNI	GGYRCC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	378, 612
BsmAI	GTCTC	2 cut(s)	415, 597
BsmBI	CGTCTC	1 cut(s)	597
BsnI	GGCC	3 cut(s)	382, 605, 617
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	3 cut(s)	19, 100, 538
BspACI	CCGC	3 cut(s)	107, 501, 534
BspANI	GGCC	3 cut(s)	382, 605, 617
BspCNI	CTCAG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	466, 616
BspPI	GGATC	1 cut(s)	108
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	19, 100, 538
Bst4CI	ACNGT	2 cut(s)	172, 332
Bst6I	CTCTTC	3 cut(s)	90, 207, 336
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	150, 532
BstDEI	CTNAG	3 cut(s)	247, 360, 417
BstF5I	GGATG	2 cut(s)	232, 238
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	3 cut(s)	22, 103, 541
BstMAI	GTCTC	2 cut(s)	415, 597
BstMBI	GATC	3 cut(s)	19, 100, 538
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 149, 422, 473, 555
BstNSI	RCATGY	2 cut(s)	295, 558
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	44, 570
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	382, 605, 617
BtsCI	GGATG	2 cut(s)	232, 238
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	337, 471
Cac8I	GCNNGC	2 cut(s)	150, 532
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	3 cut(s)	77, 381, 615
CviAII	CATG	2 cut(s)	292, 555
CviJI	RGCY	7 cut(s)	148, 152, 217, 302, 382, 605, 617
CviKI_1	RGCY	7 cut(s)	148, 152, 217, 302, 382, 605, 617
DdeI	CTNAG	3 cut(s)	247, 360, 417
DpnI	GATC	3 cut(s)	21, 102, 540
DpnII	GATC	3 cut(s)	19, 100, 538
Eam1104I	CTCTTC	3 cut(s)	90, 207, 336
EarI	CTCTTC	3 cut(s)	90, 207, 336
EciI	GGCGGA	1 cut(s)	516
Eco47I	GGWCC	1 cut(s)	77
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	2 cut(s)	295, 558
FaiI	YATR	2 cut(s)	293, 556
FatI	CATG	2 cut(s)	291, 554
FauI	CCCGC	1 cut(s)	114
Fnu4HI	GCNGC	3 cut(s)	58, 535, 559
FokI	GGATG	2 cut(s)	239, 245
Fsp4HI	GCNGC	3 cut(s)	58, 535, 559
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	3 cut(s)	58, 535, 559
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	3 cut(s)	382, 605, 617
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	2 cut(s)	295, 558
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	9 cut(s)	66, 89, 182, 236, 245, 260, 368, 389, 508
Hpy188I	TCNGA	7 cut(s)	71, 94, 241, 250, 265, 283, 577
Hpy188III	TCNNGA	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	5 cut(s)	193, 358, 415, 454, 490
HpyCH4III	ACNGT	2 cut(s)	172, 332
HpyCH4V	TGCA	5 cut(s)	11, 476, 491, 549, 558
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 149, 422, 473, 555
HpyF3I	CTNAG	3 cut(s)	247, 360, 417
Hsp92II	CATG	2 cut(s)	295, 558
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	3 cut(s)	19, 100, 538
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	157, 299
LpnPI	CCDG	7 cut(s)	105, 162, 174, 192, 420, 501, 516
Lsp1109I	GCAGC	2 cut(s)	44, 570
MaeIII	GTNAC	2 cut(s)	128, 433
MalI	GATC	3 cut(s)	21, 102, 540
MboI	GATC	3 cut(s)	19, 100, 538
MboII	GAAGA	8 cut(s)	107, 177, 224, 266, 329, 350, 353, 457
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	3 cut(s)	112, 219, 523
MlyI	GAGTC	3 cut(s)	239, 362, 502
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	68, 91, 223, 280, 319, 328, 337
MseI	TTAA	3 cut(s)	204, 222, 570
MspA1I	CMGCKG	1 cut(s)	109
MwoI	GCNNNNNNNGC	5 cut(s)	54, 149, 422, 473, 555
NdeII	GATC	3 cut(s)	19, 100, 538
NlaIII	CATG	2 cut(s)	295, 558
NlaIV	GGNNCC	2 cut(s)	466, 616
NspI	RCATGY	2 cut(s)	295, 558
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	6 cut(s)	66, 89, 182, 236, 260, 389
PkrI	GCNGC	3 cut(s)	59, 536, 560
PleI	GAGTC	3 cut(s)	239, 362, 502
PpsI	GAGTC	3 cut(s)	239, 362, 502
PspN4I	GGNNCC	2 cut(s)	466, 616
PspPI	GGNCC	3 cut(s)	77, 381, 615
PsuI	RGATCY	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	204, 222, 570
SatI	GCNGC	3 cut(s)	58, 535, 559
Sau3AI	GATC	3 cut(s)	19, 100, 538
Sau96I	GGNCC	3 cut(s)	77, 381, 615
SchI	GAGTC	3 cut(s)	239, 362, 502
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	4 cut(s)	154, 204, 304, 523
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	3 cut(s)	112, 219, 523
SsiI	CCGC	3 cut(s)	107, 501, 534
SspI	AATATT	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	172, 332
TasI	AATT	3 cut(s)	112, 219, 523
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	6 cut(s)	66, 89, 182, 236, 260, 389
Tru1I	TTAA	3 cut(s)	204, 222, 570
Tru9I	TTAA	3 cut(s)	204, 222, 570
TscAI	CASTG	2 cut(s)	337, 478
TseI	GCWGC	2 cut(s)	57, 558
TspDTI	ATGAA	5 cut(s)	17, 267, 288, 330, 402
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	337, 478
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	2 cut(s)	295, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.