Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477099.1

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1944

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 667 bp

ctgtctggaatcagcgttgaagtgaaggctggagagcccctgagtgtggtgccagaccaaggcaatgtggtgcatttgtcacaggcttgtctaggtgagtcaaagaaggcagctgacagcgttgttatctatggaaagactgcagagaagaagcttgtgttgggacatctcattcctggccaaatccctcagttgtcatttgatttggtctttgatgacgagtttgagctatcccacaactggaaaagcggtagtgtccactttgctgagtttgaatcagagtcagaagaagaggaggaagaactcccaatgattgctgcagagaatggaaaagttgaaaatgcaaaaccagctatagccaagagcaatgctgtcaaacctgaatcttctggaaagcaaaaggttaagattgaagaaccaatcaaagttgtggctgatgaagatgattccgcttctgacatggatgactcagatgacttattggatgaagatgactcatcagatgatgatgatgatgaaagtgaggatgattctgatgaggaagatgaagagacacctactcctaagaagcctgaatctaagaaaagagcccaggtctctggatcagtcaaaactccagtttctgctaagaaggcaaagatagtcaccagtactcctcagaagactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

23.97

Weight (kDa)

4.34

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	2 cut(s)	249, 450
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	178
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
AgsI	TTSAA	4 cut(s)	20, 275, 338, 413
AjnI	CCWGG	2 cut(s)	175, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	113, 154, 229, 353
AluI	AGCT	4 cut(s)	113, 154, 229, 353
Alw26I	GTCTC	2 cut(s)	545, 601
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	110, 317
AsuHPI	GGTGA	2 cut(s)	107, 637
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	39, 592
BbvI	GCAGC	2 cut(s)	122, 304
BciT130I	CCWGG	2 cut(s)	177, 593
BcoDI	GTCTC	2 cut(s)	545, 601
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	3 cut(s)	141, 318, 354
BisI	GCNGC	2 cut(s)	111, 318
BlsI	GCNGC	2 cut(s)	112, 319
BmcAI	AGTACT	1 cut(s)	652
Bme1390I	CCNGG	2 cut(s)	177, 593
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	177, 593
BpmI	CTGGAG	2 cut(s)	51, 600
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	58, 591
BsaXI	ACNNNNNCTCC	4 cut(s)	544, 574, 637, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 59, 240
Bse1I	ACTGG	3 cut(s)	245, 617, 648
Bse3DI	GCAATG	2 cut(s)	70, 373
BseBI	CCWGG	2 cut(s)	177, 593
BseDI	CCNNGG	2 cut(s)	58, 591
BseGI	GGATG	3 cut(s)	469, 490, 532
BseLI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
BseMI	GCAATG	2 cut(s)	70, 373
BseMII	CTCAG	4 cut(s)	32, 203, 258, 483
BseNI	ACTGG	3 cut(s)	245, 617, 648
BseRI	GAGGAG	2 cut(s)	308, 645
BseXI	GCAGC	2 cut(s)	122, 304
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
BsmAI	GTCTC	2 cut(s)	545, 601
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	601
Bsp1286I	GDGCHC	2 cut(s)	39, 592
Bsp143I	GATC	1 cut(s)	602
BspACI	CCGC	2 cut(s)	249, 450
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	4 cut(s)	33, 202, 259, 482
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	2 cut(s)	145, 322
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	70, 373
BsrI	ACTGG	3 cut(s)	245, 617, 648
BssECI	CCNNGG	2 cut(s)	58, 591
BssMI	GATC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	177, 593
Bst6I	CTCTTC	2 cut(s)	285, 543
BstDEI	CTNAG	8 cut(s)	41, 189, 267, 469, 564, 579, 627, 657
BstF5I	GGATG	3 cut(s)	469, 490, 532
BstKTI	GATC	1 cut(s)	605
BstMAI	GTCTC	2 cut(s)	545, 601
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 632
BstNI	CCWGG	2 cut(s)	177, 593
BstSCI	CCNGG	2 cut(s)	175, 591
BstSFI	CTRYAG	3 cut(s)	141, 318, 354
BstV1I	GCAGC	2 cut(s)	122, 304
BstXI	CCANNNNNNTGG	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	3 cut(s)	469, 490, 532
CaiI	CAGNNNCTG	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	8 cut(s)	41, 189, 267, 469, 564, 579, 627, 657
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	285, 543
EarI	CTCTTC	2 cut(s)	285, 543
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	39, 592
Eco31I	GGTCTC	1 cut(s)	601
EcoRII	CCWGG	2 cut(s)	175, 591
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	39, 592
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	463
FaiI	YATR	3 cut(s)	132, 356, 461
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	111, 318
FokI	GGATG	3 cut(s)	476, 497, 539
FriOI	GRGCYC	2 cut(s)	39, 592
Fsp4HI	GCNGC	2 cut(s)	111, 318
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	111, 318
GsuI	CTGGAG	2 cut(s)	51, 600
HaeIII	GGCC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	152
HphI	GGTGA	2 cut(s)	107, 637
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	7 cut(s)	280, 286, 457, 472, 502, 535, 660
Hpy188III	TCNNGA	3 cut(s)	6, 390, 600
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	19, 100, 625
HpyCH4V	TGCA	4 cut(s)	73, 143, 320, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 632
HpyF3I	CTNAG	8 cut(s)	41, 189, 267, 469, 564, 579, 627, 657
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	602
Lsp1109I	GCAGC	2 cut(s)	122, 304
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	78, 643
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MhlI	GDGCHC	2 cut(s)	39, 592
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	4 cut(s)	107, 290, 461, 488
MnlI	CCTC	6 cut(s)	198, 286, 289, 517, 532, 666
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	177, 593
MvaI	CCWGG	2 cut(s)	177, 593
MwoI	GCNNNNNNNGC	2 cut(s)	350, 632
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	78, 643
PfeI	GAWTC	6 cut(s)	9, 275, 383, 446, 530, 575
PkrI	GCNGC	2 cut(s)	112, 319
PleI	GAGTC	4 cut(s)	106, 289, 461, 488
PpsI	GAGTC	4 cut(s)	106, 289, 461, 488
Psp6I	CCWGG	2 cut(s)	175, 591
PspGI	CCWGG	2 cut(s)	175, 591
PspN4I	GGNNCC	1 cut(s)	51
PstI	CTGCAG	2 cut(s)	145, 322
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	111, 318
Sau3AI	GATC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	4 cut(s)	107, 290, 461, 488
ScrFI	CCNGG	2 cut(s)	177, 593
SduI	GDGCHC	2 cut(s)	39, 592
SetI	ASST	9 cut(s)	97, 115, 156, 231, 355, 382, 405, 559, 597
SfcI	CTRYAG	3 cut(s)	141, 318, 354
SsiI	CCGC	2 cut(s)	249, 450
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	175, 591
StyI	CCWWGG	1 cut(s)	58
TatI	WGTACW	1 cut(s)	650
TfiI	GAWTC	6 cut(s)	9, 275, 383, 446, 530, 575
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	78, 643
TseI	GCWGC	2 cut(s)	110, 317
Tsp45I	GTSAC	2 cut(s)	78, 643
TspDTI	ATGAA	4 cut(s)	453, 501, 531, 561
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.