AT5G22650

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002189
Physical Location & Seq
Forward (+)
7533946 .. 7536496
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22650.2

Sequence Viewer

Length: 921 bp
ATGGAGTTCTGGGGAGTTGCGGTGACACCAAAAAACGCTACTAAGGTGACTCCTGAAGAAGACAGCCTTGTCCACATTTCTCAGGCTTCACTTGACTGCACAGTGAAATCTGGAGAATCTGTGGTTTTGAGTGTGACTGTTGGTGGGGCTAAACTTGTTATTGGAACACTTTCACAAGACAAGTTCCCTCAGATTAGCTTTGATTTGGTTTTTGATAAAGAGTTTGAGCTTTCACACAGCGGTACCAAAGCAAATGTTCATTTCATTGGCTACAAATCCCCCAACATCGAGCAGGATGACTTCACTAGTTCGGATGATGAGGATGTTCCTGAAGCTGTTCCTGCTCCTGCCCCTACTGCTGTTACTGCCAACGGAAATGCTGGAGCAGCTGTTGTCAAGGCTGACACAAAGCCAAAGGCCAAACCTGCCGAAGTGAAGCCTGCAGAAGAGAAGCCTGAATCAGACGAGGAAGATGAGTCTGATGATGAAGATGAGTCTGAAGAGGATGATGACTCTGAGAAAGGAATGGATGTTGATGAAGATGACTCAGATGATGACGAGGAGGAGGATTCTGAGGATGAAGAAGAGGAGGAGACTCCTAAGAAGCCTGAGCCAATCAACAAGAAGAGGCCAAATGAATCTGTATCCAAAACACCCGTCTCTGGAAAGAAGGCAAAACCAGCAGCAGCACCAGCTTCTACTCCTCAGAAGACAGAAGAGAAGAAGAAAGGAGGACACACCGCCACACCACACCCAGCTAAGAAGGGTGGAAAGTCTCCTGTGAATGCTAACCAGAGCCCCAAGTCTGGAGGTCAATCATCCGGTGGTAACAACAACAAGAAGCCATTCAACTCAGGCAAACAATTTGGTGGTTCCAACAACAAGGGTTCTAACAAGGGCAAGGGAAAGGGTAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004407 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009791 GO:0009798 GO:0009889 GO:0009890 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010154 GO:0010162 GO:0010431 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016020 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033558 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044764 GO:0045892 GO:0045934 GO:0048316 GO:0048364 GO:0048519 GO:0048523 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0098588 GO:0098732 GO:0098805 GO:0099402 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

32.35

Weight (kDa)

4.68

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 91 5.4e-18 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 433
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 3 cut(s) 20, 240, 741
AcuI CTGAAG 3 cut(s) 75, 351, 519
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 662, 806
AgsI TTSAA 1 cut(s) 850
AhlI ACTAGT 1 cut(s) 305
AluBI AGCT 7 cut(s) 198, 229, 335, 389, 695, 758, 917
AluI AGCT 7 cut(s) 198, 229, 335, 389, 695, 758, 917
Alw26I GTCTC 3 cut(s) 587, 664, 780
AoxI GGCC 2 cut(s) 417, 629
ApeKI GCWGC 3 cut(s) 386, 683, 686
ArsI GACNNNNNNTTYG 2 cut(s) 642, 674
Asp700I GAANNNNTTC 3 cut(s) 169, 336, 845
Asp718I GGTACC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 34, 58
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 800
BbsI GAAGAC 2 cut(s) 66, 716
BbvI GCAGC 3 cut(s) 398, 695, 698
BciVI GTATCC 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 587, 664, 780
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 655
BisI GCNGC 3 cut(s) 387, 684, 687
BlsI GCNGC 3 cut(s) 388, 685, 688
BmiI GGNNCC 2 cut(s) 244, 874
BpiI GAAGAC 2 cut(s) 66, 716
BpmI CTGGAG 3 cut(s) 132, 402, 828
Bpu10I CCTNAGC 1 cut(s) 609
BsaWI WCCGGW 1 cut(s) 821
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 105, 135, 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 806
BseGI GGATG 7 cut(s) 301, 319, 328, 511, 535, 583, 818
BseLI CCNNNNNNNGG 2 cut(s) 662, 806
BseMII CTCAG 8 cut(s) 95, 203, 507, 561, 564, 600, 719, 867
BseRI GAGGAG 5 cut(s) 575, 578, 602, 605, 693
BseXI GCAGC 3 cut(s) 398, 695, 698
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 1 cut(s) 82
BshFI GGCC 2 cut(s) 419, 631
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 822
BslI CCNNNNNNNGG 2 cut(s) 662, 806
BsmAI GTCTC 3 cut(s) 587, 664, 780
BsmBI CGTCTC 1 cut(s) 664
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 419, 631
Bsp1286I GDGCHC 1 cut(s) 800
BspACI CCGC 3 cut(s) 20, 240, 741
BspANI GGCC 2 cut(s) 419, 631
BspCNI CTCAG 8 cut(s) 94, 202, 508, 560, 565, 601, 718, 866
BspLI GGNNCC 2 cut(s) 244, 874
BspMAI CTGCAG 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 103, 139
Bst6I CTCTTC 5 cut(s) 441, 495, 579, 620, 711
BstC8I GCNNGC 1 cut(s) 441
BstF5I GGATG 7 cut(s) 301, 319, 328, 511, 535, 583, 818
BstMAI GTCTC 3 cut(s) 587, 664, 780
BstMWI GCNNNNNNNGC 7 cut(s) 341, 356, 365, 386, 425, 680, 692
BstSFI CTRYAG 1 cut(s) 441
BstV1I GCAGC 3 cut(s) 398, 695, 698
BstV2I GAAGAC 2 cut(s) 66, 716
BsuI GTATCC 1 cut(s) 655
BsuRI GGCC 2 cut(s) 419, 631
BtsCI GGATG 7 cut(s) 301, 319, 328, 511, 535, 583, 818
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 441
Csp6I GTAC 1 cut(s) 243
CviQI GTAC 1 cut(s) 243
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
Eam1104I CTCTTC 5 cut(s) 441, 495, 579, 620, 711
EarI CTCTTC 5 cut(s) 441, 495, 579, 620, 711
Eco24I GRGCYC 1 cut(s) 800
Eco57I CTGAAG 3 cut(s) 75, 351, 519
EcoT38I GRGCYC 1 cut(s) 800
Esp3I CGTCTC 1 cut(s) 664
FalI AAGNNNNNCTT 2 cut(s) 51, 83
Fnu4HI GCNGC 3 cut(s) 387, 684, 687
FokI GGATG 7 cut(s) 308, 326, 335, 518, 542, 590, 805
FriOI GRGCYC 1 cut(s) 800
Fsp4HI GCNGC 3 cut(s) 387, 684, 687
FspBI CTAG 1 cut(s) 306
GluI GCNGC 3 cut(s) 387, 684, 687
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 3 cut(s) 132, 402, 828
HaeIII GGCC 2 cut(s) 419, 631
HapII CCGG 1 cut(s) 822
HpaII CCGG 1 cut(s) 822
HphI GGTGA 2 cut(s) 34, 58
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 9 cut(s) 192, 313, 463, 481, 499, 517, 550, 574, 708
Hpy188III TCNNGA 5 cut(s) 53, 111, 329, 663, 807
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 664, 757
HpyCH4III ACNGT 2 cut(s) 103, 139
HpyCH4V TGCA 2 cut(s) 99, 443
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 356, 365, 386, 425, 680, 692
KpnI GGTACC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 349, 383
Lsp1109I GCAGC 3 cut(s) 398, 695, 698
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 5 cut(s) 22, 46, 133, 361, 827
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 1 cut(s) 863
MlyI GAGTC 6 cut(s) 43, 485, 503, 506, 539, 589
MmeI TCCRAC 1 cut(s) 900
MroXI GAANNNNTTC 3 cut(s) 169, 336, 845
MseI TTAA 1 cut(s) 919
MspA1I CMGCKG 2 cut(s) 240, 389
MspI CCGG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 790
MwoI GCNNNNNNNGC 7 cut(s) 341, 356, 365, 386, 425, 680, 692
NlaIV GGNNCC 2 cut(s) 244, 874
NmuCI GTSAC 3 cut(s) 22, 46, 133
PctI GAATGC 1 cut(s) 790
PdmI GAANNNNTTC 3 cut(s) 169, 336, 845
PfeI GAWTC 4 cut(s) 116, 458, 569, 638
PkrI GCNGC 3 cut(s) 388, 685, 688
PleI GAGTC 6 cut(s) 43, 484, 502, 506, 539, 589
PpsI GAGTC 6 cut(s) 43, 484, 502, 506, 539, 589
PspFI CCCAGC 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 244, 874
PstI CTGCAG 1 cut(s) 445
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 919
SatI GCNGC 3 cut(s) 387, 684, 687
SchI GAGTC 6 cut(s) 43, 485, 503, 506, 539, 589
SduI GDGCHC 1 cut(s) 800
SfcI CTRYAG 1 cut(s) 441
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 1 cut(s) 863
SsiI CCGC 3 cut(s) 20, 240, 741
SspMI CTAG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 103, 139
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 863
TfiI GAWTC 4 cut(s) 116, 458, 569, 638
Tru1I TTAA 1 cut(s) 919
Tru9I TTAA 1 cut(s) 919
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 3 cut(s) 22, 46, 133
TseI GCWGC 3 cut(s) 386, 683, 686
Tsp45I GTSAC 3 cut(s) 22, 46, 133
TspDTI ATGAA 6 cut(s) 248, 253, 501, 552, 594, 651
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 1 cut(s) 108
XmnI GAANNNNTTC 3 cut(s) 169, 336, 845
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.