Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Reverse (-)

8731505 .. 8736840

Gene Structure 5336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G118700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCCAAATTTACCTTTTCTTCCTCTTCGGTTTCTTGATGTTTTATTTTTCTGTCAGTTGGCTAGCAGCAACTCCAAGAGTGTTGAAGTGAAGGCTGGAGAGCCAGTAAAATATGTGCCTGTTGATGGCAAAGTTGTGCACCTGTCACAGGCTTGTTTGGGCGAGACAAAGAAGGGAGCTGATCAAGGTGTCATCTCTGTGAAGATCGATGACAAGAAGTTTGTTTTGGGAACTCTTTCATCTGATAAATTCCCTCAATTGTTCCTTGACTTGGTTTTTGAGAAAGAGTTTGAGCTCTCGCACAACTTGAAAAGTGGAAGTGTCCACTTTTGTGGTTATCAGACTTTGATTGGAGAATATCCTTTTAACAATTGTGCTAATTGGTTACCATTTTCTGCTTATGTAGAATTTGATTCCTCAGATGAGGATGTCCCGATGGAAATCACACAGAATGGAATGCCAGCTCCTTCCAAGACTAACACTGTGAAACCTGAAGCTTCTGAAAAGCAAAAAGTTAAGATTGAGGAGCCAAGTAATGATGATGATGATGATTCTGATGATTCAAGTTCTGAGGATGGTTTGGGTGGTTTTGAAGATTCATCAGATGAGGATGATGATAGTGATGAGGATGATGATGCTACTGATGAGGATGATGAGGAGACACCTACTCCTAAGAAGGCTTCCAAGAAAAGACCCAATGAATCTGCTTCTAAAACTCCCGTCCCTGCTAAAAAAGCCAAGCAAGTAACTCCTCAGAAGACTGATGGAAAGAAGGCTGCGCACACTGCCACCCCACACCCTGCAAAGAAGGGTGGAAAGACTCCTGCTACAGGTGACAAGGCCAAGCCACAAACACCAAAGTCTGTTGGCGAGCACTCGTGCAAACCTTGCAGCAAGTCGTTTAATTCTGATGGTGCCCTTCAGTCACACAACAAGGCCAAGCACAGTGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

34.48

Weight (kDa)

5.04

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	914
AcsI	RAATTY	3 cut(s)	7, 248, 407
AcuI	CTGAAG	2 cut(s)	513, 905
AfiI	CCNNNNNNNGG	4 cut(s)	125, 148, 271, 830
AgsI	TTSAA	4 cut(s)	86, 310, 564, 593
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	179, 295, 464, 497
AluI	AGCT	4 cut(s)	179, 295, 464, 497
Alw21I	GWGCWC	3 cut(s)	141, 297, 876
Alw26I	GTCTC	2 cut(s)	158, 653
Alw44I	GTGCAC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	840, 936
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	3 cut(s)	66, 776, 891
ApoI	RAATTY	3 cut(s)	7, 248, 407
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 260, 292
Asp700I	GAANNNNTTC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	845
AsuNHI	GCTAGC	1 cut(s)	62
BaeGI	GKGCMC	2 cut(s)	141, 919
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	877
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	3 cut(s)	141, 297, 876
BbvI	GCAGC	3 cut(s)	78, 763, 903
BccI	CCATC	5 cut(s)	119, 430, 569, 758, 905
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	158, 653
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	828
BisI	GCNGC	3 cut(s)	67, 777, 892
BlsI	GCNGC	3 cut(s)	68, 778, 893
BmiI	GGNNCC	2 cut(s)	528, 916
BmsI	GCATC	1 cut(s)	625
BmtI	GCTAGC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	764
BpmI	CTGGAG	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 652, 682
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 148, 271, 830
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	440
BseCI	ATCGAT	1 cut(s)	207
BseGI	GGATG	5 cut(s)	433, 580, 616, 634, 655
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	4 cut(s)	125, 148, 271, 830
BseMII	CTCAG	3 cut(s)	432, 561, 767
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	3 cut(s)	539, 671, 741
BseSI	GKGCMC	2 cut(s)	141, 919
BseXI	GCAGC	3 cut(s)	78, 763, 903
BshFI	GGCC	2 cut(s)	842, 938
BshNI	GGYRCC	1 cut(s)	914
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	141, 297, 876
BslFI	GGGAC	2 cut(s)	416, 707
BslI	CCNNNNNNNGG	4 cut(s)	125, 148, 271, 830
BsmAI	GTCTC	2 cut(s)	158, 653
BsmFI	GGGAC	2 cut(s)	416, 707
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	2 cut(s)	842, 938
Bsp1286I	GDGCHC	4 cut(s)	141, 297, 876, 919
Bsp143I	GATC	2 cut(s)	181, 204
BspANI	GGCC	2 cut(s)	842, 938
BspCNI	CTCAG	3 cut(s)	431, 562, 766
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	528, 916
BspOI	GCTAGC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	914
BsrI	ACTGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	181, 204
BssSI	CACGAG	1 cut(s)	877
Bst2BI	CACGAG	1 cut(s)	877
Bst4CI	ACNGT	2 cut(s)	484, 947
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	888
BstC8I	GCNNGC	3 cut(s)	64, 462, 872
BstDEI	CTNAG	4 cut(s)	418, 570, 672, 753
BstEII	GGTNACC	1 cut(s)	384
BstENI	CCTNNNNNAGG	2 cut(s)	146, 828
BstF5I	GGATG	5 cut(s)	433, 580, 616, 634, 655
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	2 cut(s)	184, 207
BstMAI	GTCTC	2 cut(s)	158, 653
BstMBI	GATC	2 cut(s)	181, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	734, 785, 888
BstPI	GGTNACC	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	2 cut(s)	141, 919
BstV1I	GCAGC	3 cut(s)	78, 763, 903
BstV2I	GAAGAC	1 cut(s)	764
BstXI	CCANNNNNNTGG	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	842, 938
BsuTUI	ATCGAT	1 cut(s)	207
BtsCI	GGATG	5 cut(s)	433, 580, 616, 634, 655
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	480, 783, 952
Cac8I	GCNNGC	3 cut(s)	64, 462, 872
CfoI	GCGC	1 cut(s)	781
ClaI	ATCGAT	1 cut(s)	207
DdeI	CTNAG	4 cut(s)	418, 570, 672, 753
DpnI	GATC	2 cut(s)	183, 206
DpnII	GATC	2 cut(s)	181, 204
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	295
Eco57I	CTGAAG	2 cut(s)	513, 905
Eco91I	GGTNACC	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	2 cut(s)	146, 828
EcoO65I	GGTNACC	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	297
FaiI	YATR	2 cut(s)	114, 402
FaqI	GGGAC	2 cut(s)	416, 707
FbaI	TGATCA	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	67, 777, 892
FokI	GGATG	5 cut(s)	440, 587, 623, 641, 662
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	67, 777, 892
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	1 cut(s)	780
GluI	GCNGC	3 cut(s)	67, 777, 892
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	842, 938
HhaI	GCGC	1 cut(s)	781
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	6 cut(s)	413, 551, 560, 596, 701, 820
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	2 cut(s)	139, 325
Hpy188I	TCNGA	9 cut(s)	244, 342, 421, 502, 556, 571, 604, 756, 910
Hpy188III	TCNNGA	2 cut(s)	35, 433
Hpy8I	GTNNAC	2 cut(s)	139, 325
HpyAV	CCTTC	7 cut(s)	85, 166, 477, 670, 766, 802, 929
HpyCH4III	ACNGT	2 cut(s)	484, 947
HpyCH4V	TGCA	4 cut(s)	139, 803, 882, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	734, 785, 888
HpyF3I	CTNAG	4 cut(s)	418, 570, 672, 753
HspAI	GCGC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	181, 204
LmnI	GCTCC	3 cut(s)	176, 469, 526
Lsp1109I	GCAGC	3 cut(s)	78, 763, 903
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	144, 384, 745, 833, 924
MalI	GATC	2 cut(s)	183, 206
MboI	GATC	2 cut(s)	181, 204
MboII	GAAGA	5 cut(s)	11, 17, 214, 605, 769
MfeI	CAATTG	2 cut(s)	257, 370
MhlI	GDGCHC	4 cut(s)	141, 297, 876, 919
MluCI	AATT	7 cut(s)	7, 248, 257, 370, 379, 407, 904
MlyI	GAGTC	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	3 cut(s)	366, 516, 903
MslI	CAYNNNNRTG	2 cut(s)	197, 330
MunI	CAATTG	2 cut(s)	257, 370
Mva1269I	GAATGC	1 cut(s)	462
MwoI	GCNNNNNNNGC	3 cut(s)	734, 785, 888
NdeII	GATC	2 cut(s)	181, 204
NheI	GCTAGC	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	528, 916
NmuCI	GTSAC	3 cut(s)	144, 833, 924
NsbI	TGCGCA	1 cut(s)	780
OliI	CACNNNNGTG	1 cut(s)	330
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	5 cut(s)	413, 551, 560, 596, 701
PkrI	GCNGC	3 cut(s)	68, 778, 893
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	297
PspEI	GGTNACC	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	528, 916
RseI	CAYNNNNRTG	2 cut(s)	197, 330
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	366, 516, 903
SatI	GCNGC	3 cut(s)	67, 777, 892
Sau3AI	GATC	2 cut(s)	181, 204
SchI	GAGTC	1 cut(s)	814
SduI	GDGCHC	4 cut(s)	141, 297, 876, 919
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	828
SmiMI	CAYNNNNRTG	2 cut(s)	197, 330
Sse9I	AATT	7 cut(s)	7, 248, 257, 370, 379, 407, 904
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	484, 947
TaqI	TCGA	1 cut(s)	207
TasI	AATT	7 cut(s)	7, 248, 257, 370, 379, 407, 904
TfiI	GAWTC	5 cut(s)	413, 551, 560, 596, 701
Tru1I	TTAA	3 cut(s)	366, 516, 903
Tru9I	TTAA	3 cut(s)	366, 516, 903
TscAI	CASTG	3 cut(s)	487, 790, 952
TseFI	GTSAC	3 cut(s)	144, 833, 924
TseI	GCWGC	3 cut(s)	66, 776, 891
Tsp45I	GTSAC	3 cut(s)	144, 833, 924
TspDTI	ATGAA	3 cut(s)	228, 588, 714
TspRI	CASTG	3 cut(s)	487, 790, 952
VneI	GTGCAC	1 cut(s)	137
XagI	CCTNNNNNAGG	2 cut(s)	146, 828
XapI	RAATTY	3 cut(s)	7, 248, 407
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.