RLG00000034982

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002189
Physical Location & Seq
Forward (+)
58301264 .. 58304206
2943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034982

Sequence Viewer

Length: 861 bp
ATGGAGTTCTGGGGTGTTGAAGTGAAGGCTGGAGAGCCCCTGAGTGTAGTGCCAGACCAAGGCAATGTGGTGCATTTGTCACAGGCTTGTCTAGGCGAGTCAAAGAAGGCAGCTGACAGCGTTGTTATCTATGGAAAGACTGGAGAGAAGAAGCTTGTGTTGGGACATCTTATTCCTGGCCAAATCCCTCAGTTGTCATTTGATTTGGTCTTTGATGATGAGTTTGAGCTATCCCACAACTGGAAAAGTGGTAGTGTCCACTTTGCTGAGTTTGAATCAGAGTCAGAAGAAGAGGAGGAAGAACTCCCAATGATCGCTGCAGAGAATGGAAAAGTTGAAAATGCAAAACCAGCTATAGCCAAGAGCAATGCTGTCAAACCTGAATCTTCCGGAAAGCAAAAGGTTAAGATTGAAGAACCAATCAAAGTTGAGGCTGATGAAGATGATTCCGCTTCTGACATGGATGACTCAGATGACTTATTGGATGAAGATGACTCATCAGATGATGATGATGATGAAAGTGAGGATGATTCTGATGAGGAAGATGAAGAGACACCTACTCCTAAGAAGCCTGAATCTAAGAAAAGGGCTCAGGTCTCTGGATCAGTCAAAACTCCAGTTTCTGCTAAGAAGGCAAAGATAGTCACCAGTACTCCTCAGAAGACTGATGGTAAGAAAGGCGGCCACACAGATACTCCACACCCTGCAAAGAAGGGAAAGACTCCTGCTACTGATAAATCCAAGACACAGACCCCAAAGTCTGCTGGTGGCAATTTCTCCTGCGGCTCCTGCAGCAAGTCATTTGGTTCAGATGGTGCTCTCCAGTCTCACAACAAGGCTAAGCATAGTGCTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

30.6

Weight (kDa)

4.74

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 88 3.2e-16 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 757
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 3 cut(s) 450, 681, 783
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 2 cut(s) 178, 682
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 2 cut(s) 59, 240
AgsI TTSAA 4 cut(s) 20, 275, 338, 413
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 4 cut(s) 113, 154, 229, 353
AluI AGCT 4 cut(s) 113, 154, 229, 353
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 3 cut(s) 545, 601, 831
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 2 cut(s) 178, 682
ApeKI GCWGC 3 cut(s) 110, 317, 792
AsuHPI GGTGA 1 cut(s) 637
BalI TGGCCA 1 cut(s) 180
BanII GRGCYC 2 cut(s) 39, 592
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 122, 304, 804
BccI CCATC 2 cut(s) 662, 806
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 545, 601, 831
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 3 cut(s) 318, 354, 790
BisI GCNGC 5 cut(s) 111, 318, 682, 784, 793
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 5 cut(s) 112, 319, 683, 785, 794
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 787
BmrFI CCNGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 4 cut(s) 51, 162, 600, 806
Bpu10I CCTNAGC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 840
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 6 cut(s) 544, 574, 637, 667, 679, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 240
Bse1I ACTGG 5 cut(s) 145, 245, 617, 648, 823
Bse3DI GCAATG 2 cut(s) 70, 373
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 3 cut(s) 469, 490, 532
BseLI CCNNNNNNNGG 2 cut(s) 59, 240
BseMI GCAATG 2 cut(s) 70, 373
BseMII CTCAG 6 cut(s) 32, 203, 258, 483, 605, 671
BseNI ACTGG 5 cut(s) 145, 245, 617, 648, 823
BseRI GAGGAG 2 cut(s) 308, 645
BseXI GCAGC 3 cut(s) 122, 304, 804
BshFI GGCC 2 cut(s) 180, 684
BsiHKAI GWGCWC 1 cut(s) 820
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 59, 240
BsmAI GTCTC 3 cut(s) 545, 601, 831
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 2 cut(s) 180, 684
Bso31I GGTCTC 1 cut(s) 601
Bsp1286I GDGCHC 3 cut(s) 39, 592, 820
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 2 cut(s) 312, 602
Bsp1720I GCTNAGC 1 cut(s) 840
BspACI CCGC 3 cut(s) 450, 681, 783
BspANI GGCC 2 cut(s) 180, 684
BspCNI CTCAG 6 cut(s) 33, 202, 259, 482, 604, 670
BspEI TCCGGA 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 787
BspMAI CTGCAG 2 cut(s) 322, 794
BspPI GGATC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 70, 373
BsrI ACTGG 5 cut(s) 145, 245, 617, 648, 823
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 312, 602
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 177
Bst6I CTCTTC 2 cut(s) 285, 543
BstF5I GGATG 3 cut(s) 469, 490, 532
BstKTI GATC 2 cut(s) 315, 605
BstMAI GTCTC 3 cut(s) 545, 601, 831
BstMBI GATC 2 cut(s) 312, 602
BstMWI GCNNNNNNNGC 4 cut(s) 350, 632, 789, 792
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 3 cut(s) 318, 354, 790
BstV1I GCAGC 3 cut(s) 122, 304, 804
BstV2I GAAGAC 1 cut(s) 668
BsuRI GGCC 2 cut(s) 180, 684
BtsCI GGATG 3 cut(s) 469, 490, 532
CaiI CAGNNNCTG 1 cut(s) 623
Csp6I GTAC 1 cut(s) 651
CviAII CATG 1 cut(s) 460
CviQI GTAC 1 cut(s) 651
DpnI GATC 2 cut(s) 314, 604
DpnII GATC 2 cut(s) 312, 602
DrdI GACNNNNNNGTC 1 cut(s) 757
DseDI GACNNNNNNGTC 1 cut(s) 757
EaeI YGGCCR 2 cut(s) 178, 682
Eam1104I CTCTTC 2 cut(s) 285, 543
EarI CTCTTC 2 cut(s) 285, 543
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 2 cut(s) 39, 592
Eco31I GGTCTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 2 cut(s) 39, 592
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 1 cut(s) 463
FaiI YATR 4 cut(s) 132, 356, 461, 846
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 5 cut(s) 111, 318, 682, 784, 793
FokI GGATG 3 cut(s) 476, 497, 539
FriOI GRGCYC 2 cut(s) 39, 592
Fsp4HI GCNGC 5 cut(s) 111, 318, 682, 784, 793
FspBI CTAG 1 cut(s) 92
GluI GCNGC 5 cut(s) 111, 318, 682, 784, 793
GsuI CTGGAG 4 cut(s) 51, 162, 600, 806
HaeIII GGCC 2 cut(s) 180, 684
HapII CCGG 1 cut(s) 390
Hin1II CATG 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 8 cut(s) 280, 286, 457, 472, 502, 535, 660, 811
Hpy188III TCNNGA 2 cut(s) 390, 600
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 19, 100, 625, 706
HpyCH4V TGCA 5 cut(s) 73, 320, 344, 707, 792
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 632, 789, 792
Hsp92II CATG 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 2 cut(s) 312, 602
LmnI GCTCC 1 cut(s) 791
Lsp1109I GCAGC 3 cut(s) 122, 304, 804
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 78, 643
MalI GATC 2 cut(s) 314, 604
MboI GATC 2 cut(s) 312, 602
MhlI GDGCHC 3 cut(s) 39, 592, 820
MlsI TGGCCA 1 cut(s) 180
MluCI AATT 1 cut(s) 772
MluNI TGGCCA 1 cut(s) 180
MlyI GAGTC 5 cut(s) 107, 290, 461, 488, 715
MnlI CCTC 7 cut(s) 198, 286, 289, 424, 517, 532, 666
Mox20I TGGCCA 1 cut(s) 180
MroI TCCGGA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 180
MseI TTAA 1 cut(s) 405
Msp20I TGGCCA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 350, 632, 789, 792
NdeII GATC 2 cut(s) 312, 602
NlaIII CATG 1 cut(s) 463
NlaIV GGNNCC 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 78, 643
PfeI GAWTC 5 cut(s) 275, 383, 446, 530, 575
PkrI GCNGC 5 cut(s) 112, 319, 683, 785, 794
PleI GAGTC 5 cut(s) 106, 289, 461, 488, 715
PpsI GAGTC 5 cut(s) 106, 289, 461, 488, 715
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 787
PstI CTGCAG 2 cut(s) 322, 794
PstNI CAGNNNCTG 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 5 cut(s) 111, 318, 682, 784, 793
Sau3AI GATC 2 cut(s) 312, 602
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 5 cut(s) 107, 290, 461, 488, 715
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 3 cut(s) 39, 592, 820
SetI ASST 8 cut(s) 115, 156, 231, 355, 382, 405, 559, 597
SfcI CTRYAG 3 cut(s) 318, 354, 790
Sse9I AATT 1 cut(s) 772
SsiI CCGC 3 cut(s) 450, 681, 783
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 58
TasI AATT 1 cut(s) 772
TatI WGTACW 1 cut(s) 650
TauI GCSGC 2 cut(s) 684, 786
TfiI GAWTC 5 cut(s) 275, 383, 446, 530, 575
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TseFI GTSAC 2 cut(s) 78, 643
TseI GCWGC 3 cut(s) 110, 317, 792
Tsp45I GTSAC 2 cut(s) 78, 643
TspDTI ATGAA 4 cut(s) 453, 501, 531, 561
XspI CTAG 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.