Rw2G041190

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002189
Physical Location & Seq
Reverse (-)
67134608 .. 67135405
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041190.1

Sequence Viewer

Length: 366 bp
ATGTTGTGCAGATTGGGTGTTGAAGTGAAGGCTGGAAAGCCCCTGAGTGTAGTGCCAAACCAAGGCAATGTGGTGCATTTGTCACAATCGTTTGTTCTGTACGCTTGTCTAGGTGAGTCAAAGAAGGCAGCTGACAGCATTGTTATCTATGGAAACACCAGAGAGCAGAAGCTTGTGTTGGGGCATCTCATTCTTAGCCAAATCCCACAGTTGTCATTTGATTTGGTCTTTGATGATGATTTTGAACTATCCCACAACTGGAAAAGTGGTATTGTCCACTTTGCTGCTGATCAATCCGTAATGGGAGATGAATATCCTTTCACTATATTTCTGTACTTTTCAGTAATTTATGGGTCTTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

5.39

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 6 - 93 6e-08 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 101, 335
AfiI CCNNNNNNNGG 2 cut(s) 62, 258
AgsI TTSAA 2 cut(s) 23, 245
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 131, 172
AluI AGCT 2 cut(s) 131, 172
ApeKI GCWGC 2 cut(s) 128, 284
AsuHPI GGTGA 1 cut(s) 125
BbvI GCAGC 2 cut(s) 140, 271
BclI TGATCA 1 cut(s) 289
BfaI CTAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 129, 285
BlsI GCNGC 2 cut(s) 130, 286
BmsI GCATC 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 258
Bse1I ACTGG 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 62, 258
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 140, 271
BsgI GTGCAG 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 62, 258
Bsp143I GATC 1 cut(s) 289
BspCNI CTCAG 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 44, 194
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstV1I GCAGC 2 cut(s) 140, 271
Csp6I GTAC 2 cut(s) 100, 334
CviJI RGCY 5 cut(s) 32, 40, 131, 172, 198
CviKI_1 RGCY 5 cut(s) 32, 40, 131, 172, 198
CviQI GTAC 2 cut(s) 100, 334
DdeI CTNAG 2 cut(s) 44, 194
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaiI YATR 3 cut(s) 150, 326, 351
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 129, 285
Fsp4HI GCNGC 2 cut(s) 129, 285
FspBI CTAG 1 cut(s) 110
GluI GCNGC 2 cut(s) 129, 285
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 2 cut(s) 22, 118
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 9, 76
HpyF3I CTNAG 2 cut(s) 44, 194
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 1 cut(s) 289
LpnPI CCDG 4 cut(s) 18, 56, 172, 244
Lsp1109I GCAGC 2 cut(s) 140, 271
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MluCI AATT 1 cut(s) 345
MlyI GAGTC 1 cut(s) 125
MseI TTAA 1 cut(s) 364
MspA1I CMGCKG 1 cut(s) 131
NdeII GATC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 130, 286
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 2 cut(s) 101, 335
RsaNI GTAC 2 cut(s) 100, 334
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 2 cut(s) 129, 285
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 1 cut(s) 125
SetI ASST 3 cut(s) 115, 133, 174
SfaNI GCATC 1 cut(s) 193
SgeI CNNG 8 cut(s) 45, 55, 74, 117, 122, 171, 185, 271
Sse9I AATT 1 cut(s) 345
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 210
TasI AATT 1 cut(s) 345
TatI WGTACW 1 cut(s) 333
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 2 cut(s) 128, 284
Tsp45I GTSAC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 286
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.