RLG00000030120

Histone deacetylase HDT1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002189
Physical Location & Seq
Forward (+)
55680372 .. 55681110
739 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030120

Sequence Viewer

Length: 411 bp
ATGTTTTCTGTGAGCTTTAGCCCAGACCTTTTGACTACACAGGCTTGTCTAGGCGAGTTAAAGAAGGCAGCTGATATCATTGTTATCTATGGAAAGACCGGAGAGCAGAAGCTTGTGTTGGGACATCTCATTCCTAGCCAAATCCCACAGTTGTCATTTCATTTGGTCTTTGATGATGAGTTTGAACTATCCCACAACTGGAAAAGTGGTACTGTCCACTTTGCTGATTTTGTGCCTGCTGCCATTAGTTCTGTAGGGTATCGAGTATTTCTGGGGCACAAACAATACTTCGTTTCTTTAGACGTAGGTGCAGGAAAGATGCAATGGTATGCATTTCACAAGGAACCAGCTGGTGGTGCTGATGCCTCCAATGGTACTTATGCTCAAGATGCCCTTAGACTTTTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.97

Weight (kDa)

6.02

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 4 - 74 3.3e-07 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AfaI GTAC 2 cut(s) 211, 376
AfiI CCNNNNNNNGG 2 cut(s) 198, 353
AgsI TTSAA 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 4 cut(s) 15, 71, 112, 350
AluI AGCT 4 cut(s) 15, 71, 112, 350
ApeKI GCWGC 2 cut(s) 68, 239
BaeGI GKGCMC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 80, 226
BfaI CTAG 2 cut(s) 50, 135
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 2 cut(s) 69, 240
BlsI GCNGC 2 cut(s) 70, 241
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 3 cut(s) 309, 352, 379
BpuEI CTTGAG 1 cut(s) 369
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 353
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 198, 353
BseMI GCAATG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 80, 226
BsgI GTGCAG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 198, 353
BsmFI GGGAC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 329
BsrI ACTGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 150, 214
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 395
BstMWI GCNNNNNNNGC 2 cut(s) 356, 389
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 80, 226
Cac8I GCNNGC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 210, 375
CviJI RGCY 7 cut(s) 15, 21, 44, 71, 112, 138, 350
CviKI_1 RGCY 7 cut(s) 15, 21, 44, 71, 112, 138, 350
CviQI GTAC 2 cut(s) 210, 375
DdeI CTNAG 1 cut(s) 395
Eco32I GATATC 1 cut(s) 76
EcoRV GATATC 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 334
FaiI YATR 3 cut(s) 90, 330, 381
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 69, 240
Fsp4HI GCNGC 2 cut(s) 69, 240
FspBI CTAG 2 cut(s) 50, 135
GluI GCNGC 2 cut(s) 69, 240
HapII CCGG 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 110
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 2 cut(s) 150, 214
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 311, 322, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 389
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 303
LpnPI CCDG 9 cut(s) 26, 36, 112, 184, 249, 257, 297, 336, 360
Lsp1109I GCAGC 2 cut(s) 80, 226
LweI GCATC 3 cut(s) 309, 352, 379
MaeI CTAG 2 cut(s) 50, 135
MaeII ACGT 1 cut(s) 303
MhlI GDGCHC 1 cut(s) 279
MnlI CCTC 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 71, 350
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 356, 389
NlaIV GGNNCC 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 334
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 2 cut(s) 70, 241
PspN4I GGNNCC 1 cut(s) 345
PvuII CAGCTG 2 cut(s) 71, 350
RsaI GTAC 2 cut(s) 211, 376
RsaNI GTAC 2 cut(s) 210, 375
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 69, 240
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 17, 30, 73, 114, 306, 310, 352
SfaNI GCATC 3 cut(s) 309, 352, 379
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 384
SmoI CTYRAG 1 cut(s) 384
SspMI CTAG 2 cut(s) 50, 135
TaaI ACNGT 2 cut(s) 150, 214
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 262
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 2 cut(s) 68, 239
TspDTI ATGAA 1 cut(s) 149
Van91I CCANNNNNTGG 1 cut(s) 353
XspI CTAG 2 cut(s) 50, 135
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.