MD11G1156600.v1.1

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002189
Physical Location & Seq
Reverse (-)
15067629 .. 15068836
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1156600.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGAGTTTTGGGGTGTTGAAGTGAAGGCTGGAGAGCCTCTAAAAGTAGTGCCAGAGGAAAGCTCTGTTATCCACTTGTCACAGGCAACTCTGGGCGAGTTGAAAAAGGGAGGTGATCAGTGTGTTATCCATGTCAAGGTTGGGAACCAGAAGCTTGTTTTGGCAAATCTCTCATCTGATAAAATTCCTCAGATTCCCTTTGACTTGGTCTTTGACAAAGAGTTCGAGCTCTCGCACAACTTGAAAAGTGGGAGTGTCCACTTCTGTGGTTATCAAACTTGCCTCGCAGAATATCCTTTTAATCGTTTGTGTTTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.78

Weight (kDa)

5.74

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 92 2.4e-20 Nucleoplasmin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 3 cut(s) 20, 103, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 3 cut(s) 63, 154, 229
AluI AGCT 3 cut(s) 63, 154, 229
Alw21I GWGCWC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 183
ArsI GACNNNNNNTTYG 4 cut(s) 194, 206, 226, 238
AsuHPI GGTGA 1 cut(s) 125
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BclI TGATCA 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 146
BssMI GATC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 125
CviAII CATG 1 cut(s) 131
CviJI RGCY 5 cut(s) 29, 37, 63, 154, 229
CviKI_1 RGCY 5 cut(s) 29, 37, 63, 154, 229
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 1 cut(s) 134
FaiI YATR 2 cut(s) 132, 316
FatI CATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 231
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 193
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 178, 192
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 15, 66, 68, 77, 161
MaeIII GTNAC 1 cut(s) 78
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 183
MnlI CCTC 5 cut(s) 48, 49, 104, 198, 293
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 264
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 78
OliI CACNNNNGTG 1 cut(s) 264
PfeI GAWTC 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 146
PsyI GACNNNGTC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 65, 115, 141, 156, 231
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 1 cut(s) 183
SstI GAGCTC 1 cut(s) 231
TaqI TCGA 1 cut(s) 225
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 1 cut(s) 125
TseFI GTSAC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 78
TspRI CASTG 1 cut(s) 125
Tth111I GACNNNGTC 1 cut(s) 206
XapI RAATTY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.