Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003641.1

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Forward (+)

69273 .. 72040

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003641.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggagttctggggcgttgaagtgaaggctggagagcccctgagtgtggtgccagaccaaggcaatgtggtgcatttgtcacaggcttgtctaggtgagtcaaagaaggcagctgacagcgttgttatctatggaaagactgcagagaagaagcttgtgttgggacatctcattcctggccaaatccctcagttgtcatttgatttggtctttgatgacgagtttgagctatcccacaactggaaaagcggtagtgtccactttgctgagtttgaatcagagtcagaagaagaggaggaagaactcccaatgattgctgcagagaatggaaaagttgaaaatgcaaaaccagctatagccaagagcaatgctgtcaaacctgaatcttctggaaagcaaaaggttaagattgaagaaccaatcaaagttgtggctgatgaagatgattccgcttctgacatggatgactcagatgacttattggatgaagatgactcatcagatgatgatgatgatgaaagtgaggatgattctgatgaggaagatgaagagacacctactcctaagaagcctgaatctaagaaaagagcccaggtctctggatcagtcaaaactccagtttctgctaagaaggcaaagatagtcaccagtactcctcagaagactgatggtaagaagggcggccacacagatactccacaccctgcaaagaaggggaagactcctgctactgataaatccaagacacaaactccaaaatctgctggtggcaatttctcctgcggttcctgcagcaagtcatttggttcagatggtgctcttcagtctcacaacaaggctaagcatagtgctggaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

30.58

Weight (kDa)

4.77

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	49
AciI	CCGC	4 cut(s)	249, 450, 681, 783
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	2 cut(s)	178, 682
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	1 cut(s)	652
AfiI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
AgsI	TTSAA	4 cut(s)	20, 275, 338, 413
AjnI	CCWGG	2 cut(s)	175, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	113, 154, 229, 353
AluI	AGCT	4 cut(s)	113, 154, 229, 353
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	3 cut(s)	545, 601, 831
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	178, 682
ApeKI	GCWGC	3 cut(s)	110, 317, 792
AsuHPI	GGTGA	2 cut(s)	107, 637
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	49
BanII	GRGCYC	2 cut(s)	39, 592
BbsI	GAAGAC	2 cut(s)	668, 725
Bbv12I	GWGCWC	1 cut(s)	820
BbvI	GCAGC	3 cut(s)	122, 304, 804
BccI	CCATC	2 cut(s)	662, 806
BciT130I	CCWGG	2 cut(s)	177, 593
BcoDI	GTCTC	3 cut(s)	545, 601, 831
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	4 cut(s)	141, 318, 354, 790
BisI	GCNGC	4 cut(s)	111, 318, 682, 793
BlpI	GCTNAGC	1 cut(s)	840
BlsI	GCNGC	4 cut(s)	112, 319, 683, 794
BmcAI	AGTACT	1 cut(s)	652
Bme1390I	CCNGG	2 cut(s)	177, 593
BmiI	GGNNCC	2 cut(s)	51, 787
BmrFI	CCNGG	2 cut(s)	177, 593
BpiI	GAAGAC	2 cut(s)	668, 725
BpmI	CTGGAG	2 cut(s)	51, 600
Bpu1102I	GCTNAGC	1 cut(s)	840
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	58, 591
BsaXI	ACNNNNNCTCC	8 cut(s)	544, 574, 637, 667, 679, 709, 736, 766
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 59, 240
Bse1I	ACTGG	3 cut(s)	245, 617, 648
Bse3DI	GCAATG	2 cut(s)	70, 373
BseBI	CCWGG	2 cut(s)	177, 593
BseDI	CCNNGG	2 cut(s)	58, 591
BseGI	GGATG	3 cut(s)	469, 490, 532
BseLI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
BseMI	GCAATG	2 cut(s)	70, 373
BseMII	CTCAG	5 cut(s)	32, 203, 258, 483, 671
BseNI	ACTGG	3 cut(s)	245, 617, 648
BseRI	GAGGAG	2 cut(s)	308, 645
BseXI	GCAGC	3 cut(s)	122, 304, 804
BshFI	GGCC	2 cut(s)	180, 684
BshNI	GGYRCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	820
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	46, 59, 240
BsmAI	GTCTC	3 cut(s)	545, 601, 831
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	180, 684
Bso31I	GGTCTC	1 cut(s)	601
Bsp1286I	GDGCHC	3 cut(s)	39, 592, 820
Bsp143I	GATC	1 cut(s)	602
Bsp1720I	GCTNAGC	1 cut(s)	840
BspACI	CCGC	4 cut(s)	249, 450, 681, 783
BspANI	GGCC	2 cut(s)	180, 684
BspCNI	CTCAG	5 cut(s)	33, 202, 259, 482, 670
BspLI	GGNNCC	2 cut(s)	51, 787
BspMAI	CTGCAG	3 cut(s)	145, 322, 794
BspPI	GGATC	1 cut(s)	610
BspQI	GCTCTTC	1 cut(s)	825
BspT107I	GGYRCC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	601
BsrDI	GCAATG	2 cut(s)	70, 373
BsrI	ACTGG	3 cut(s)	245, 617, 648
BssECI	CCNNGG	2 cut(s)	58, 591
BssMI	GATC	1 cut(s)	602
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	177, 593
Bst6I	CTCTTC	3 cut(s)	285, 543, 825
BstDEI	CTNAG	9 cut(s)	41, 189, 267, 469, 564, 579, 627, 657, 840
BstF5I	GGATG	3 cut(s)	469, 490, 532
BstKTI	GATC	1 cut(s)	605
BstMAI	GTCTC	3 cut(s)	545, 601, 831
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 632, 789
BstNI	CCWGG	2 cut(s)	177, 593
BstSCI	CCNGG	2 cut(s)	175, 591
BstSFI	CTRYAG	4 cut(s)	141, 318, 354, 790
BstV1I	GCAGC	3 cut(s)	122, 304, 804
BstV2I	GAAGAC	2 cut(s)	668, 725
BstXI	CCANNNNNNTGG	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	180, 684
BtsCI	GGATG	3 cut(s)	469, 490, 532
CaiI	CAGNNNCTG	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	651
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	1 cut(s)	651
DdeI	CTNAG	9 cut(s)	41, 189, 267, 469, 564, 579, 627, 657, 840
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
EaeI	YGGCCR	2 cut(s)	178, 682
Eam1104I	CTCTTC	3 cut(s)	285, 543, 825
EarI	CTCTTC	3 cut(s)	285, 543, 825
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	2 cut(s)	39, 592
Eco31I	GGTCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	175, 591
EcoT14I	CCWWGG	1 cut(s)	58
EcoT38I	GRGCYC	2 cut(s)	39, 592
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	463
FaiI	YATR	4 cut(s)	132, 356, 461, 846
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	111, 318, 682, 793
FokI	GGATG	3 cut(s)	476, 497, 539
FriOI	GRGCYC	2 cut(s)	39, 592
Fsp4HI	GCNGC	4 cut(s)	111, 318, 682, 793
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	4 cut(s)	111, 318, 682, 793
GsuI	CTGGAG	2 cut(s)	51, 600
HaeIII	GGCC	2 cut(s)	180, 684
Hin1II	CATG	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	152
HphI	GGTGA	2 cut(s)	107, 637
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	8 cut(s)	280, 286, 457, 472, 502, 535, 660, 811
Hpy188III	TCNNGA	2 cut(s)	390, 600
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	5 cut(s)	19, 100, 625, 670, 706
HpyCH4V	TGCA	6 cut(s)	73, 143, 320, 344, 707, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 632, 789
HpyF3I	CTNAG	9 cut(s)	41, 189, 267, 469, 564, 579, 627, 657, 840
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	1 cut(s)	602
LguI	GCTCTTC	1 cut(s)	825
Lsp1109I	GCAGC	3 cut(s)	122, 304, 804
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	2 cut(s)	78, 643
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MhlI	GDGCHC	3 cut(s)	39, 592, 820
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	1 cut(s)	772
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	5 cut(s)	107, 290, 461, 488, 715
MnlI	CCTC	6 cut(s)	198, 286, 289, 517, 532, 666
Mox20I	TGGCCA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	177, 593
MvaI	CCWGG	2 cut(s)	177, 593
MwoI	GCNNNNNNNGC	3 cut(s)	350, 632, 789
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	2 cut(s)	51, 787
NmuCI	GTSAC	2 cut(s)	78, 643
PciSI	GCTCTTC	1 cut(s)	825
PfeI	GAWTC	5 cut(s)	275, 383, 446, 530, 575
PkrI	GCNGC	4 cut(s)	112, 319, 683, 794
PleI	GAGTC	5 cut(s)	106, 289, 461, 488, 715
PpsI	GAGTC	5 cut(s)	106, 289, 461, 488, 715
Psp6I	CCWGG	2 cut(s)	175, 591
PspGI	CCWGG	2 cut(s)	175, 591
PspN4I	GGNNCC	2 cut(s)	51, 787
PstI	CTGCAG	3 cut(s)	145, 322, 794
PstNI	CAGNNNCTG	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	1 cut(s)	652
RsaNI	GTAC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	825
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	111, 318, 682, 793
Sau3AI	GATC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	5 cut(s)	107, 290, 461, 488, 715
ScrFI	CCNGG	2 cut(s)	177, 593
SduI	GDGCHC	3 cut(s)	39, 592, 820
SetI	ASST	9 cut(s)	97, 115, 156, 231, 355, 382, 405, 559, 597
SfcI	CTRYAG	4 cut(s)	141, 318, 354, 790
Sse9I	AATT	1 cut(s)	772
SsiI	CCGC	4 cut(s)	249, 450, 681, 783
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	175, 591
StyI	CCWWGG	1 cut(s)	58
TasI	AATT	1 cut(s)	772
TatI	WGTACW	1 cut(s)	650
TauI	GCSGC	1 cut(s)	684
TfiI	GAWTC	5 cut(s)	275, 383, 446, 530, 575
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	78, 643
TseI	GCWGC	3 cut(s)	110, 317, 792
Tsp45I	GTSAC	2 cut(s)	78, 643
TspDTI	ATGAA	4 cut(s)	453, 501, 531, 561
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.