Histone deacetylase HDT1-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G44750 AT3G44750 AT5G22650 AT5G22650 |
| fragaria_vesca | FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 |
| malus_domestica | MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1 |
| prunus_persica | Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1 |
| pyrus_communis | pycom03g09030 pycom11g12710 |
| rosa_chinensis | RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331 |
| rosa_laevigata | RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982 |
| rosa_multiflora | Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00025000 Rroxscaffold_1G00036030 |
| rosa_rugosa | Rorug05G0292300 |
| rosa_samantha | Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400 |
| rosa_wichuraiana | Rw2G041190 Rw5G034060 Rw7G037170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 207, 540 |
| AclWI | GGATC | 1 cut(s) | 367 |
| AcoI | YGGCCR | 1 cut(s) | 439 |
| AcuI | CTGAAG | 1 cut(s) | 563 |
| AfaI | GTAC | 1 cut(s) | 409 |
| AgsI | TTSAA | 3 cut(s) | 38, 95, 170 |
| AjnI | CCWGG | 1 cut(s) | 348 |
| AluBI | AGCT | 1 cut(s) | 110 |
| AluI | AGCT | 1 cut(s) | 110 |
| Alw21I | GWGCWC | 1 cut(s) | 577 |
| Alw26I | GTCTC | 3 cut(s) | 302, 358, 588 |
| AlwI | GGATC | 1 cut(s) | 367 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 380 |
| AoxI | GGCC | 1 cut(s) | 439 |
| ApeKI | GCWGC | 3 cut(s) | 13, 74, 549 |
| BalI | TGGCCA | 1 cut(s) | 441 |
| BanII | GRGCYC | 1 cut(s) | 349 |
| BbsI | GAAGAC | 1 cut(s) | 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 577 |
| BbvI | GCAGC | 2 cut(s) | 61, 561 |
| BccI | CCATC | 2 cut(s) | 419, 563 |
| BciT130I | CCWGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 3 cut(s) | 302, 358, 588 |
| BfmI | CTRYAG | 3 cut(s) | 75, 111, 547 |
| BisI | GCNGC | 3 cut(s) | 14, 75, 550 |
| BlpI | GCTNAGC | 1 cut(s) | 597 |
| BlsI | GCNGC | 3 cut(s) | 15, 76, 551 |
| BmcAI | AGTACT | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 1 cut(s) | 350 |
| BmiI | GGNNCC | 1 cut(s) | 544 |
| BmrFI | CCNGG | 1 cut(s) | 350 |
| BpiI | GAAGAC | 1 cut(s) | 425 |
| BpmI | CTGGAG | 1 cut(s) | 357 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 597 |
| BsaI | GGTCTC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 2 cut(s) | 17, 348 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 301, 331, 436, 466, 493, 523 |
| Bse1I | ACTGG | 2 cut(s) | 374, 405 |
| Bse3DI | GCAATG | 1 cut(s) | 130 |
| BseBI | CCWGG | 1 cut(s) | 350 |
| BseDI | CCNNGG | 2 cut(s) | 17, 348 |
| BseGI | GGATG | 5 cut(s) | 33, 226, 247, 268, 289 |
| BseMI | GCAATG | 1 cut(s) | 130 |
| BseMII | CTCAG | 2 cut(s) | 240, 428 |
| BseNI | ACTGG | 2 cut(s) | 374, 405 |
| BseRI | GAGGAG | 1 cut(s) | 402 |
| BseXI | GCAGC | 2 cut(s) | 61, 561 |
| BshFI | GGCC | 1 cut(s) | 441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 577 |
| BsmAI | GTCTC | 3 cut(s) | 302, 358, 588 |
| BsnI | GGCC | 1 cut(s) | 441 |
| Bso31I | GGTCTC | 1 cut(s) | 358 |
| Bsp1286I | GDGCHC | 2 cut(s) | 349, 577 |
| Bsp143I | GATC | 1 cut(s) | 359 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 597 |
| BspACI | CCGC | 2 cut(s) | 207, 540 |
| BspANI | GGCC | 1 cut(s) | 441 |
| BspCNI | CTCAG | 2 cut(s) | 239, 427 |
| BspLI | GGNNCC | 1 cut(s) | 544 |
| BspMAI | CTGCAG | 2 cut(s) | 79, 551 |
| BspPI | GGATC | 1 cut(s) | 367 |
| BspQI | GCTCTTC | 1 cut(s) | 582 |
| BspTNI | GGTCTC | 1 cut(s) | 358 |
| BsrDI | GCAATG | 1 cut(s) | 130 |
| BsrI | ACTGG | 2 cut(s) | 374, 405 |
| BssECI | CCNNGG | 2 cut(s) | 17, 348 |
| BssMI | GATC | 1 cut(s) | 359 |
| Bst2UI | CCWGG | 1 cut(s) | 350 |
| Bst6I | CTCTTC | 3 cut(s) | 48, 300, 582 |
| BstDEI | CTNAG | 5 cut(s) | 226, 321, 384, 414, 597 |
| BstDSI | CCRYGG | 1 cut(s) | 17 |
| BstF5I | GGATG | 5 cut(s) | 33, 226, 247, 268, 289 |
| BstKTI | GATC | 1 cut(s) | 362 |
| BstMAI | GTCTC | 3 cut(s) | 302, 358, 588 |
| BstMBI | GATC | 1 cut(s) | 359 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 107, 389, 546 |
| BstNI | CCWGG | 1 cut(s) | 350 |
| BstSCI | CCNGG | 1 cut(s) | 348 |
| BstSFI | CTRYAG | 3 cut(s) | 75, 111, 547 |
| BstV1I | GCAGC | 2 cut(s) | 61, 561 |
| BstV2I | GAAGAC | 1 cut(s) | 425 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 356 |
| BsuRI | GGCC | 1 cut(s) | 441 |
| BtgI | CCRYGG | 1 cut(s) | 17 |
| BtsCI | GGATG | 5 cut(s) | 33, 226, 247, 268, 289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 380 |
| Csp6I | GTAC | 1 cut(s) | 408 |
| CviAII | CATG | 1 cut(s) | 217 |
| CviJI | RGCY | 7 cut(s) | 110, 116, 191, 328, 347, 441, 596 |
| CviKI_1 | RGCY | 7 cut(s) | 110, 116, 191, 328, 347, 441, 596 |
| CviQI | GTAC | 1 cut(s) | 408 |
| DdeI | CTNAG | 5 cut(s) | 226, 321, 384, 414, 597 |
| DpnI | GATC | 1 cut(s) | 361 |
| DpnII | GATC | 1 cut(s) | 359 |
| EaeI | YGGCCR | 1 cut(s) | 439 |
| Eam1104I | CTCTTC | 3 cut(s) | 48, 300, 582 |
| EarI | CTCTTC | 3 cut(s) | 48, 300, 582 |
| Eco24I | GRGCYC | 1 cut(s) | 349 |
| Eco31I | GGTCTC | 1 cut(s) | 358 |
| Eco57I | CTGAAG | 1 cut(s) | 563 |
| EcoRII | CCWGG | 1 cut(s) | 348 |
| EcoT38I | GRGCYC | 1 cut(s) | 349 |
| FaeI | CATG | 1 cut(s) | 220 |
| FaiI | YATR | 3 cut(s) | 113, 218, 603 |
| FatI | CATG | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 3 cut(s) | 14, 75, 550 |
| FokI | GGATG | 5 cut(s) | 40, 233, 254, 275, 296 |
| FriOI | GRGCYC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 3 cut(s) | 14, 75, 550 |
| GluI | GCNGC | 3 cut(s) | 14, 75, 550 |
| GsuI | CTGGAG | 1 cut(s) | 357 |
| HaeIII | GGCC | 1 cut(s) | 441 |
| Hin1II | CATG | 1 cut(s) | 220 |
| Hpy188I | TCNGA | 9 cut(s) | 27, 43, 52, 214, 229, 259, 292, 417, 568 |
| Hpy188III | TCNNGA | 2 cut(s) | 147, 357 |
| HpyAV | CCTTC | 3 cut(s) | 382, 427, 463 |
| HpyCH4V | TGCA | 4 cut(s) | 77, 101, 464, 549 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 107, 389, 546 |
| HpyF3I | CTNAG | 5 cut(s) | 226, 321, 384, 414, 597 |
| Hsp92II | CATG | 1 cut(s) | 220 |
| Kzo9I | GATC | 1 cut(s) | 359 |
| LguI | GCTCTTC | 1 cut(s) | 582 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 561 |
| MalI | GATC | 1 cut(s) | 361 |
| MboI | GATC | 1 cut(s) | 359 |
| MhlI | GDGCHC | 2 cut(s) | 349, 577 |
| MlsI | TGGCCA | 1 cut(s) | 441 |
| MluCI | AATT | 1 cut(s) | 529 |
| MluNI | TGGCCA | 1 cut(s) | 441 |
| MlyI | GAGTC | 4 cut(s) | 53, 218, 245, 472 |
| MnlI | CCTC | 6 cut(s) | 49, 181, 253, 274, 289, 423 |
| Mox20I | TGGCCA | 1 cut(s) | 441 |
| MscI | TGGCCA | 1 cut(s) | 441 |
| MseI | TTAA | 1 cut(s) | 162 |
| Msp20I | TGGCCA | 1 cut(s) | 441 |
| MspR9I | CCNGG | 1 cut(s) | 350 |
| MvaI | CCWGG | 1 cut(s) | 350 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 107, 389, 546 |
| NdeII | GATC | 1 cut(s) | 359 |
| NlaIII | CATG | 1 cut(s) | 220 |
| NlaIV | GGNNCC | 1 cut(s) | 544 |
| PciSI | GCTCTTC | 1 cut(s) | 582 |
| PfeI | GAWTC | 6 cut(s) | 22, 38, 140, 203, 287, 332 |
| PkrI | GCNGC | 3 cut(s) | 15, 76, 551 |
| PleI | GAGTC | 4 cut(s) | 52, 218, 245, 472 |
| PpsI | GAGTC | 4 cut(s) | 52, 218, 245, 472 |
| Psp6I | CCWGG | 1 cut(s) | 348 |
| PspGI | CCWGG | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 544 |
| PstI | CTGCAG | 2 cut(s) | 79, 551 |
| PstNI | CAGNNNCTG | 1 cut(s) | 380 |
| RsaI | GTAC | 1 cut(s) | 409 |
| RsaNI | GTAC | 1 cut(s) | 408 |
| SapI | GCTCTTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 3 cut(s) | 14, 75, 550 |
| Sau3AI | GATC | 1 cut(s) | 359 |
| ScaI | AGTACT | 1 cut(s) | 409 |
| SchI | GAGTC | 4 cut(s) | 53, 218, 245, 472 |
| ScrFI | CCNGG | 1 cut(s) | 350 |
| SduI | GDGCHC | 2 cut(s) | 349, 577 |
| SetI | ASST | 5 cut(s) | 112, 139, 162, 316, 354 |
| SfcI | CTRYAG | 3 cut(s) | 75, 111, 547 |
| Sse9I | AATT | 1 cut(s) | 529 |
| SsiI | CCGC | 2 cut(s) | 207, 540 |
| StyD4I | CCNGG | 1 cut(s) | 348 |
| TasI | AATT | 1 cut(s) | 529 |
| TatI | WGTACW | 1 cut(s) | 407 |
| TfiI | GAWTC | 6 cut(s) | 22, 38, 140, 203, 287, 332 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TseI | GCWGC | 3 cut(s) | 13, 74, 549 |
| TspDTI | ATGAA | 4 cut(s) | 210, 258, 288, 318 |
| TspGWI | ACGGA | 1 cut(s) | 34 |
| ZrmI | AGTACT | 1 cut(s) | 409 |