Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002189

Physical Location & Seq

Genomic Coordinates Forward (+)

47622869 .. 47623221

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG371500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTCTCTTCTATAAATGTATGGTCATCTCTAGCTTGTCGCTCAAAGCCTCAAACCTATGTAGGTAGTGCCAGACCAAGGCAATGTGGTGCATTTGTCACAGGTGAGTCAAAGACGGCAGCTGACGATGTTGTGATCTATGGAAAGACCAGAGGGAAGATGCTTGTGTTGGGACATCTTATTCCGGGCCAAATCCCTCAGTTGTCATGTGACTTGGTCTTTAATGATGAGTATGAGCTATGCCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

83

Amino Acids

9.06

Weight (kDa)

7.68

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44750 AT3G44750 AT5G22650 AT5G22650
fragaria_vesca	FvH4_3g29940 FvH4_3g29940 FvH4_3g29940 FvH4_3g29940
malus_domestica	MD03G1134300.v1.1 MD03G1134400.v1.1 MD11G1156500.v1.1 MD11G1156600.v1.1
prunus_persica	Prupe.6G118700_v2.0.a1 Prupe.6G118700_v2.0.a1
pyrus_communis	pycom03g09030 pycom11g12710
rosa_chinensis	RchiOBHm_Chr5g0055321 RchiOBHm_Chr5g0055331
rosa_laevigata	RLG00000006424 RLG00000025325 RLG00000030120 RLG00000034982
rosa_multiflora	Rmu_co8477099.1_g000001 Rmu_sc0003641.1_g000018 Rmu_sc0011151.1_g000006
rosa_roxburghii	Rroxscaffold_1G00025000 Rroxscaffold_1G00036030
rosa_rugosa	Rorug05G0292300
rosa_samantha	Rh4BG009400 Rh5AG362100 Rh5AG362200 Rh5BG373700 Rh5CG371500 Rh5CG395800 Rh5CG395900 Rh5DG356700 Rh5DG387300 Rh5DG387400 Rh7AG320500 Rh7DG436400
rosa_wichuraiana	Rw2G041190 Rw5G034060 Rw7G037170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	78
AluBI	AGCT	3 cut(s)	35, 122, 238
AluI	AGCT	3 cut(s)	35, 122, 238
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	32, 250
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	187
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	5 cut(s)	35, 49, 122, 189, 238
CviKI_1	RGCY	5 cut(s)	35, 49, 122, 189, 238
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	210
FaiI	YATR	7 cut(s)	14, 22, 60, 141, 208, 234, 241
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	32, 250
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	1 cut(s)	210
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	4 cut(s)	85, 87, 163, 198
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	32, 250
MaeIII	GTNAC	2 cut(s)	97, 209
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	60, 146, 207
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	97, 209
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	6 cut(s)	37, 59, 67, 106, 124, 240
SfaNI	GCATC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	32, 250
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	97, 209
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	97, 209
Tth111I	GACNNNGTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	32, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.